RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR1L8Q8NGR8 309 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 RCC1LQ96I51 464 aaKnown RBP16.68■□□□□ 0.26
VPS28-209ENST00000528142 PBDC1Q9BVG4 233 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 ZNF430Q9H8G1 570 aaPredicted RBP16.68■□□□□ 0.26
VPS28-209ENST00000528142 KIAA1456Q9P272 454 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 A0A1W2PPI3 338 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 CGB1A6NKQ9 187 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 ODF3BA8MYP8 253 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 E7EUB6 86 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 SLC25A17O43808 307 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 CRYGBP07316 175 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 ATP5IP56385 69 aaPredicted RBP16.68■□□□□ 0.26
VPS28-209ENST00000528142 TREML4Q6UXN2 200 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 SSX7Q7RTT5 188 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 BPESC1Q9GZL8 116 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 EIF5A2Q9GZV4 153 aaKnown RBP16.68■□□□□ 0.26
VPS28-209ENST00000528142 A1L4Q6 167 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 RAB2AP61019 212 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 LMO4P61968 165 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 GUCA2BQ16661 112 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 TPTE2P1Q5T6R2 138 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 RPP25LQ8N5L8 163 aaKnown RBP16.67■□□□□ 0.26
VPS28-209ENST00000528142 TEX45Q8NA69 505 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 OR10W1Q8NGF6 305 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 UNKLQ9H9P5 680 aaKnown RBP16.67■□□□□ 0.26
VPS28-209ENST00000528142 TPSG1Q9NRR2 321 aa16.67■□□□□ 0.26
VPS28-209ENST00000528142 MPDU1O75352 247 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 HTR1DP28221 377 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 C2orf83Q53S99 150 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 ARSJQ5FYB0 599 aaPredicted RBP16.66■□□□□ 0.26
VPS28-209ENST00000528142 ZNF709Q8N972 641 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 C1orf159Q96HA4 380 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 DPM3Q9P2X0 92 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 RBFOX3A6NFN3 312 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 C17orf112F2Z3M2 114 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 RNASE2P10153 161 aaKnown RBP16.66■□□□□ 0.26
VPS28-209ENST00000528142 KLRD1Q13241 179 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 SVBPQ8N300 66 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 CLDND2Q8NHS1 167 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 RARRES2Q99969 163 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 LSM4Q9Y4Z0 139 aaKnown RBP16.66■□□□□ 0.26
VPS28-209ENST00000528142 KPTNQ9Y664 436 aa16.66■□□□□ 0.26
VPS28-209ENST00000528142 SMCO3A2RU48 225 aa16.65■□□□□ 0.26
VPS28-209ENST00000528142 MBP02144 154 aa16.65■□□□□ 0.26
VPS28-209ENST00000528142 FFAR4Q5NUL3 377 aa16.65■□□□□ 0.26
VPS28-209ENST00000528142 SMDT1Q9H4I9 107 aa16.65■□□□□ 0.26
VPS28-209ENST00000528142 A0A1W2PN81 502 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 FNDC10F2Z333 226 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 CNTFRP26992 372 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 CHRNA7P36544 502 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 PPT1P50897 306 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 PSG5Q15238 335 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 C10orf55Q5SWW7 151 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 LCN15Q6UWW0 184 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 VMO1Q7Z5L0 202 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 CCL19Q99731 98 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 SIRPDQ9H106 197 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 NPVFQ9HCQ7 196 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 CRYBG3Q68DQ2 2970 aa16.64■□□□□ 0.25
VPS28-209ENST00000528142 PDLIM4P50479 330 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 LCN2P80188 198 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 PRSS8Q16651 343 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 MGST2Q99735 147 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 RNF5Q99942 180 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 IGHV2-70DA0A0C4DH43 119 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 ERHP84090 104 aaKnown RBP16.63■□□□□ 0.25
VPS28-209ENST00000528142 WT1-ASQ06250 92 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 BTN1A1Q13410 526 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 ZNF787Q6DD87 383 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 LHFPL4Q7Z7J7 247 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 OR10G4Q8NGN3 311 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 OR10G9Q8NGN4 311 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 OR10G7Q8NGN6 311 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 SIGLEC9Q9Y336 463 aa16.63■□□□□ 0.25
VPS28-209ENST00000528142 TNCP24821 2201 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 TIMM23O14925 209 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 SOX15O60248 233 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 M6PRP20645 277 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 CEACAM3P40198 252 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 OPRK1P41145 380 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 HABP2Q14520 560 aaPredicted RBP16.62■□□□□ 0.25
VPS28-209ENST00000528142 ZNF506Q5JVG8 444 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 CFHR4Q92496 578 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 GGTLC1Q9BX51 225 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 NKX6-2Q9C056 277 aaPredicted RBP16.62■□□□□ 0.25
VPS28-209ENST00000528142 AKAP6Q13023 2319 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 ARHGAP32A7KAX9 2087 aa16.62■□□□□ 0.25
VPS28-209ENST00000528142 MAP1LC3B2A6NCE7 125 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 VENTXO95231 258 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 HOXB4P17483 251 aaPredicted RBP16.61■□□□□ 0.25
VPS28-209ENST00000528142 HAGHQ16775 308 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 MMD2Q8IY49 270 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 MAP1LC3BQ9GZQ8 125 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 SLC35B3Q9H1N7 401 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 SLC39A9Q9NUM3 307 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 FGF8P55075 233 aaPredicted RBP16.61■□□□□ 0.25
VPS28-209ENST00000528142 ICAM4Q14773 271 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 HILPDAQ9Y5L2 63 aa16.61■□□□□ 0.25
VPS28-209ENST00000528142 USP9YO00507 2555 aaPredicted RBP16.6■□□□□ 0.25
VPS28-209ENST00000528142 CTXND1A0A1B0GTU2 59 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms