RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 NCS1P62166 190 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 ZNF57Q68EA5 555 aaPredicted RBP13.18□□□□□ -0.3
DDX41-217ENST00000515562 SLC16A13Q7RTY0 426 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 OR1L8Q8NGR8 309 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 ZNF502Q8TBZ5 544 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 GPX8Q8TED1 209 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 FCAMRQ8WWV6 532 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 CACNG8Q8WXS5 425 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 FUNDC2Q9BWH2 189 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 COMMD3Q9UBI1 195 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 SERPINE2P07093 398 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 CD7P09564 240 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 RPA2P15927 270 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 HLA-DMAP28067 261 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 LPCAT3Q6P1A2 487 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 LINC00322Q6ZN03 302 aaPredicted RBP13.17□□□□□ -0.3
DDX41-217ENST00000515562 TMEM61Q8N0U2 210 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 OR10W1Q8NGF6 305 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 VN1R17PQ8TDU5 208 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 LSM10Q969L4 123 aaKnown RBP13.17□□□□□ -0.3
DDX41-217ENST00000515562 MARC2Q969Z3 335 aa13.17□□□□□ -0.3
DDX41-217ENST00000515562 WDR89Q96FK6 387 aaPredicted RBP13.17□□□□□ -0.3
DDX41-217ENST00000515562 TEX50A0A1B0GTY4 177 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 OR11H12B2RN74 326 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 SNAPC5O75971 98 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 KRASP01116 189 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 OR13C7P0DN81 318 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 RCVRNP35243 200 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 LPAR6P43657 344 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 TSPAN5P62079 268 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 WT1-ASQ06250 92 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 PLET1Q6UQ28 207 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 LYSMD2Q8IV50 215 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 UXS1Q8NBZ7 420 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 TSC22D3Q99576 134 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 SRD5A3Q9H8P0 318 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 NDUFA4L2Q9NRX3 87 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 FAM212BQ9NTI7 297 aaPredicted RBP13.16□□□□□ -0.3
DDX41-217ENST00000515562 MLXQ9UH92 298 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 PRNDQ9UKY0 176 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 UFC1Q9Y3C8 167 aa13.16□□□□□ -0.3
DDX41-217ENST00000515562 G6PCP35575 357 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 ELLP55199 621 aaPredicted RBP13.15□□□□□ -0.3
DDX41-217ENST00000515562 VBP1P61758 197 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 ANKRD55Q3KP44 614 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 ZNF585BQ52M93 769 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 UNQ9165/PRO28630Q6UXU0 137 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 SNX29P2Q8IUI4 249 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 DEFB125Q8N687 156 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 OR5B3Q8NH48 314 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 ATP6V0BQ99437 205 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 HINT2Q9BX68 163 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 HIPK2Q9H2X6 1198 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 FKBP11Q9NYL4 201 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 OR51B2Q9Y5P1 312 aa13.15□□□□□ -0.3
DDX41-217ENST00000515562 F11RQ9Y624 299 aaKnown RBP13.15□□□□□ -0.3
DDX41-217ENST00000515562 TGOLN2O43493 480 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 PHLDA2Q53GA4 152 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 SLC25A24Q6NUK1 477 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 BTNL8Q6UX41 500 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 OR52B4Q8NGK2 314 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 OR1L6Q8NGR2 347 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 BSCL2Q96G97 398 aaPredicted RBP13.14□□□□□ -0.31
DDX41-217ENST00000515562 TMEM56Q96MV1 263 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 ZNF436Q9C0F3 470 aaPredicted RBP13.14□□□□□ -0.31
DDX41-217ENST00000515562 WFDC10AQ9H1F0 79 aa13.14□□□□□ -0.31
DDX41-217ENST00000515562 MRPL27Q9P0M9 148 aaKnown RBP13.14□□□□□ -0.31
DDX41-217ENST00000515562 TRAV25A0A0B4J276 109 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 RBMY1BA6NDE4 496 aaKnown RBP13.13□□□□□ -0.31
DDX41-217ENST00000515562 RBMY1EA6NEQ0 496 aaKnown RBP13.13□□□□□ -0.31
DDX41-217ENST00000515562 C15orf61A6NNL5 157 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 RBMY1DP0C7P1 496 aaKnown RBP13.13□□□□□ -0.31
DDX41-217ENST00000515562 C8orf88P0DMB2 117 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 RORCP51449 518 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 UCP3P55916 312 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 TM4SF20Q53R12 229 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 ZFAND6Q6FIF0 208 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 SPSB3Q6PJ21 355 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 SLC38A6Q8IZM9 456 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 TMEM190Q8WZ59 177 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 AP3S1Q92572 193 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 TMEM14BQ9NUH8 114 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 NSG2Q9Y328 171 aa13.13□□□□□ -0.31
DDX41-217ENST00000515562 IGHV3-35A0A0C4DH35 117 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 OR2T8A6NH00 312 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 HPGDSO60760 199 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 ELK1P19419 428 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 MZT2AQ6P582 158 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 RBPMS2Q6ZRY4 209 aaKnown RBP13.12□□□□□ -0.31
DDX41-217ENST00000515562 TBC1D26Q86UD7 250 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 RETNQ9HD89 108 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 DAZ1Q9NQZ3 744 aaKnown RBP13.12□□□□□ -0.31
DDX41-217ENST00000515562 C21orf62Q9NYP8 219 aa13.12□□□□□ -0.31
DDX41-217ENST00000515562 DYNC2H1Q8NCM8 4307 aaKnown RBP13.12□□□□□ -0.31
DDX41-217ENST00000515562 SCAF4O95104 1147 aaKnown RBP13.11□□□□□ -0.31
DDX41-217ENST00000515562 C5orf66Q9H5L9 145 aa13.11□□□□□ -0.31
DDX41-217ENST00000515562 SELENOKQ9Y6D0 94 aa13.11□□□□□ -0.31
DDX41-217ENST00000515562 FAM25AB3EWG3 89 aa13.1□□□□□ -0.31
DDX41-217ENST00000515562 FAM25CB3EWG5 89 aa13.1□□□□□ -0.31
DDX41-217ENST00000515562 FAM25GB3EWG6 89 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms