RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PPIAL4AQ9Y536 164 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 INSIG2Q9Y5U4 225 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 OBSL1O75147 1896 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 ESPL1Q14674 2120 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 TEX50A0A1B0GTY4 177 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 SPAARA0A1B0GVQ0 90 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 DPRXA6NFQ7 191 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 IL18BPO95998 194 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 ACSF3Q4G176 576 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 TNFRSF19Q9NS68 423 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 FOXF2Q12947 444 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 MORN2Q502X0 79 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 TREML4Q6UXN2 200 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF738Q8NE65 137 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 SPOCK3Q9BQ16 436 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 NUP210Q8TEM1 1887 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 IGHV2OR16-5A0A0B4J2B6 119 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 TRGV8A0A0C4DH27 118 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 NCBP2LA6PVI3 153 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 NPIPB11E5RHQ5 1161 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 GZMBP10144 247 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 MAS1LP35410 378 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 ACTL10Q5JWF8 245 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 C19orf35Q6ZS72 473 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 PRNTQ86SH4 94 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 EAF1Q96JC9 268 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 MIEN1Q9BRT3 115 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 MRPL32Q9BYC8 188 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 WNT10AQ9GZT5 417 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 HSPB8Q9UJY1 196 aa7.02□□□□□ -1.29
LIMCH1-216ENST00000512820 YPEL1O60688 119 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 OR4A8P0C604 315 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 FCER1GP30273 86 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 RPL27AP46776 148 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 ATP5IP56385 69 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF726P1Q15940 193 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF664Q8N3J9 261 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 YPEL2Q96QA6 119 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 HIGD1AQ9Y241 93 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 DNAJC13O75165 2243 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 SLC25A17O43808 307 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 FOXL1Q12952 345 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM256Q8N2U0 113 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 PARD6GQ9BYG4 376 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 RNASE7Q9H1E1 156 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 IFI27L2Q9H2X8 130 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 KBTBD11-OT1A0A1B0GTJ5 212 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 C16orf97H3BN30 126 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 PFN1P07737 140 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 STAG3L2P0CL84 134 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 STAG3L3P0CL85 134 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 LINC00205P59089 165 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 EFNB3Q15768 340 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 DNLZQ5SXM8 178 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 SSX8Q7RTT4 187 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM222BQ8WU58 562 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 PGLYRP4Q96LB8 373 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 RNF24Q9Y225 148 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 LNP1A1A4G5 178 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 TIMP3P35625 211 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 FDCSPQ8NFU4 85 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM122AQ96E09 287 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 GGTLC1Q9BX51 225 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 SPRR3Q9UBC9 169 aa7.01□□□□□ -1.29
LIMCH1-216ENST00000512820 C15orf61A6NNL5 157 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF785A8K8V0 405 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 H3BTX0 84 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 RBFOX2O43251 390 aaKnown RBP eCLIP7□□□□□ -1.29
LIMCH1-216ENST00000512820 LEPROTL1O95214 131 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 IGKV1-39P01597 117 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 IGKV1D-39P04432 117 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 REG1AP05451 166 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 C1orf185Q5T7R7 199 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 ASCL5Q7RTU5 278 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM19A2Q8N3H0 131 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM105Q8N8V8 129 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF436-AS1Q8NC38 126 aaPredicted RBP7□□□□□ -1.29
LIMCH1-216ENST00000512820 C1orf162Q8NEQ5 155 aaPredicted RBP7□□□□□ -1.29
LIMCH1-216ENST00000512820 SHANK1Q9Y566 2161 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7□□□□□ -1.29
LIMCH1-216ENST00000512820 MC5RP33032 325 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 TNFSF10P50591 281 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM177Q53S58 311 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM144Q7Z5S9 345 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 RBM14Q96PK6 669 aaKnown RBP7□□□□□ -1.29
LIMCH1-216ENST00000512820 NRN1Q9NPD7 142 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 PPP1R14DQ9NXH3 145 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 IFITM10A6NMD0 228 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 LINC00473A8K010 186 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 BMPR1BO00238 502 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 SS18L1O75177 396 aaPredicted RBP7□□□□□ -1.29
LIMCH1-216ENST00000512820 GLRXP35754 106 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF124Q15973 351 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 C5orf17Q8NAS9 161 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 OR4C13Q8NGP0 309 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 RNF138Q8WVD3 245 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 CRIM1Q9NZV1 1036 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 KIAA2026Q5HYC2 2103 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 CEP250Q9BV73 2442 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 SAA2-SAA4A0A096LPE2 208 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms