RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 YPEL3P61236 119 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 OR4A47Q6IF82 309 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 PPP1R35Q8TAP8 253 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 VN1R17PQ8TDU5 208 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 BTF3L4Q96K17 158 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 UHRF2Q96PU4 802 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 YPEL2Q96QA6 119 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 IL36BQ9NZH7 164 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 LSM4Q9Y4Z0 139 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 PKDREJQ9NTG1 2253 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 OR10J4P0C629 311 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 LINC00310P59036 64 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 FAM90A1Q86YD7 464 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 MMD2Q8IY49 270 aa7.62□□□□□ -1.19
LIMCH1-215ENST00000512632 TTC28Q96AY4 2481 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 ZNF891A8MT65 544 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 SRRM5B3KS81 715 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 ZNF883P0CG24 379 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 CDKN1AP38936 164 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 HSPE1P61604 102 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 RAB31Q13636 194 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 BATFQ16520 125 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 TMEM249Q2WGJ8 235 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 ZCCHC14Q8WYQ9 949 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 EAF1Q96JC9 268 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 RNASE7Q9H1E1 156 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 PARD6AQ9NPB6 346 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 OR7C2O60412 319 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 PQLC2Q6ZP29 291 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 OR4S2Q8NH73 311 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 BDP1A6H8Y1 2624 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 A8MXE2 369 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 MRPS11P82912 194 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 ST6GALNAC3Q8NDV1 305 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 OR52E5Q8NH55 327 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 GUCD1Q96NT3 240 aa7.61□□□□□ -1.19
LIMCH1-215ENST00000512632 SAA2-SAA4A0A096LPE2 208 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 SAA2P0DJI9 122 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 TMPRSS3P57727 454 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 TPPP2P59282 170 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 SUMO1P63165 101 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 CENPWQ5EE01 88 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 TRAT1Q6PIZ9 186 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 ITLN1Q8WWA0 313 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 TXNDC17Q9BRA2 123 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 PCNX1Q96RV3 2341 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 HELTA6NFD8 242 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 C15orf61A6NNL5 157 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 AARDQ4LEZ3 155 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 NEU1Q99519 415 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 SERTAD4Q9NUC0 356 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 NAT8BQ9UHF3 227 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 YLPM1P49750 1951 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 ZNF25P17030 456 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 SNRNP40Q96DI7 357 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 NABP2Q9BQ15 211 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 J3QR06 171 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 M0R1B8 84 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 MMP23AO75900 390 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 MT-CO2P00403 227 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 KRTDAPP60985 99 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 RND1Q92730 232 aa7.6□□□□□ -1.19
LIMCH1-215ENST00000512632 A6NNC1 897 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 MGST1P10620 155 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 GNG4P50150 75 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 LGALS4P56470 323 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 MRPL54Q6P161 138 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 OR5AU1Q8NGC0 362 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 OR51B2Q9Y5P1 312 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 SPTBN2O15020 2390 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 IGHV3-48P01763 117 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 LINC00869P0C866 280 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 C17orf58Q2M2W7 97 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 RPEL1Q2QD12 228 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 NHLRC2Q8NBF2 726 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 DDB2Q92466 427 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 PLEKHA3Q9HB20 300 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 IDI2-AS1Q9NZ38 188 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 RNF114Q9Y508 228 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 IGKV1OR2-108A0A075B7D4 117 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 KIR2DL5BA0A0G2JN68 375 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 KIR2DL5BA0A0G2JPC4 375 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 CA1P00915 261 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 IGKV1-16P04430 117 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 FOSL1P15407 271 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 KIR2DL5AQ8N109 375 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 OR9G1Q8NH87 305 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 ZNF71Q9NQZ8 489 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 POLEQ07864 2286 aa7.59□□□□□ -1.19
LIMCH1-215ENST00000512632 COL27A1Q8IZC6 1860 aaPredicted RBP7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 FAM90A9PA6NNJ1 464 aa7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 F2RL2O00254 374 aa7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 IRF2P14316 349 aa7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 SELENOTP62341 195 aa7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 PROCRQ9UNN8 238 aa7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 V9GYV3 84 aa7.59□□□□□ -1.2
LIMCH1-215ENST00000512632 TDGF1P3P51864 188 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR20EP86478 221 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR20CP86479 221 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR20DP86480 221 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms