RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PPIAL4AQ9Y536 164 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 PXMP4Q9Y6I8 212 aa13.6□□□□□ -0.23
CCDC88B-210ENST00000494566 CCL8P80075 99 aa13.59□□□□□ -0.23
CCDC88B-210ENST00000494566 ZNF90Q03938 601 aa13.59□□□□□ -0.23
CCDC88B-210ENST00000494566 GCM1Q9NP62 436 aa13.59□□□□□ -0.23
CCDC88B-210ENST00000494566 POLR3KQ9Y2Y1 108 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-210ENST00000494566 IER3P46695 156 aa13.59□□□□□ -0.23
CCDC88B-210ENST00000494566 FAM216AQ8WUB2 273 aa13.59□□□□□ -0.23
CCDC88B-210ENST00000494566 OR10J4P0C629 311 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 C17orf58Q2M2W7 97 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 CT45A1Q5HYN5 189 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 Q8N7P7 452 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 CT45A3Q8NHU0 189 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 VN1R17PQ8TDU5 208 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 SFRP2Q96HF1 295 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 MGST2Q99735 147 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 PYGO2Q9BRQ0 406 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 NDUFAF3Q9BU61 184 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 HIPK2Q9H2X6 1198 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 A0A1B0GWJ7 208 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 IGHV1-46P01743 117 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 TNFAIP6P98066 277 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 TREML4Q6UXN2 200 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 LYG1Q8N1E2 194 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 GBGT1Q8N5D6 347 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 OR4P4Q8NGL7 312 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 JPT1Q9UK76 154 aa13.58□□□□□ -0.24
CCDC88B-210ENST00000494566 C17orf112F2Z3M2 114 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 CCKARP32238 428 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 TIMP3P35625 211 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 MZT1Q08AG7 82 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 DOLPP1Q86YN1 238 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 S1PR3Q99500 378 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 TUBG2Q9NRH3 451 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 TMEM140Q9NV12 185 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 SAA2-SAA4A0A096LPE2 208 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 HPRT1P00492 218 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 LHBP01229 141 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 SAA2P0DJI9 122 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 CA1P00915 261 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 RPL31P62899 125 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 IGFL3Q6UXB1 125 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 WFDC8Q8IUA0 241 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 PRSS33Q8NF86 280 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 PPP1R35Q8TAP8 253 aa13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 CIB3Q96Q77 187 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-210ENST00000494566 YPEL1O60688 119 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 GGCTO75223 188 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 MBP02144 154 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 ANAPC16Q96DE5 110 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 YPEL2Q96QA6 119 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 HSPB9Q9BQS6 159 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 ASH1LQ9NR48 2969 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 NAGKQ9UJ70 344 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 SERF1AO75920 110 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 ZNF25P17030 456 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 BAGE3Q86Y29 109 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 BAGE2Q86Y30 109 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 CISD2Q8N5K1 135 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 PARD6GQ9BYG4 376 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 RNASE7Q9H1E1 156 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 RNF114Q9Y508 228 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 TIMM9Q9Y5J7 89 aa13.56□□□□□ -0.24
CCDC88B-210ENST00000494566 IGLV3-9A0A075B6K5 115 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 A8MXE2 369 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 K7EN84 100 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 CD40P25942 277 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 TFPI2P48307 235 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 RELBQ01201 579 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 ZNF124Q15973 351 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 ATP6V1FQ16864 119 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 TRAT1Q6PIZ9 186 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 CMTM2Q8TAZ6 248 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 SGK494Q96LW2 274 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 LRFN3Q9BTN0 628 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 RNF7Q9UBF6 113 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 MED13LQ71F56 2210 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 F2RL2O00254 374 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 TGOLN2O43493 480 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 ERVK-16P61578 105 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 IQCJQ1A5X6 159 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 KRTCAP3Q53RY4 240 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 OR8I2Q8N0Y5 310 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 FAM169BQ8N8A8 192 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 SERTAD4Q9NUC0 356 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 ELOVL5Q9NYP7 299 aa13.55□□□□□ -0.24
CCDC88B-210ENST00000494566 IGFBP2P18065 325 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 KRTDAPP60985 99 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 RPL15P61313 204 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 MIR17HGQ75NE6 70 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 CENPVQ7Z7K6 275 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 RND1Q92730 232 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 ABHD17AQ96GS6 310 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 GAFA1Q96PS6 74 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 GGTLC1Q9BX51 225 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 SAMD10Q9BYL1 202 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 WDR83OSQ9Y284 106 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 FCN1O00602 326 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 TMPRSS2O15393 492 aa13.54□□□□□ -0.24
CCDC88B-210ENST00000494566 ERVFC1-1P60608 527 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms