RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 BAZ2BQ9UIF8 2168 aaKnown RBP0.8□□□□□ -2.28
CPSF3-205ENST00000489629 RTEL1-TNFRSF6BF6WH68 1400 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 DCCP43146 1447 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
CPSF3-205ENST00000489629 TRANK1O15050 2925 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 SETBP1Q9Y6X0 1596 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 HEATR5BQ9P2D3 2071 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 TRBV20OR9-2A0A075B6H5 130 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 IGLV3-9A0A075B6K5 115 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 TMEM114B3SHH9 223 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 PGLYRP1O75594 196 aaPredicted RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 RPP14O95059 124 aaKnown RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 SRP19P09132 144 aaKnown RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF705DP0CH99 300 aaPredicted RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 HOXA6P31267 233 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 HAAOP46952 286 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 CSN1S1P47710 185 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 RAB13P51153 203 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 AQP4P55087 323 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 TAS2R20P59543 309 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 RAB14P61106 215 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 CTAG1AP78358 180 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF90Q03938 601 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 FADDQ13158 208 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 LPCAT3Q6P1A2 487 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 LYZL1Q6UWQ5 148 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 SLC35E3Q7Z769 313 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 LRRC25Q8N386 305 aaPredicted RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 TBC1D19Q8N5T2 526 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 C9orf163Q8N9P6 203 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 OR52R1Q8NGF1 315 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 DGCR14Q96DF8 476 aaKnown RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 MRPS24Q96EL2 167 aaKnown RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 TMA16Q96EY4 203 aaKnown RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 C11orf68Q9H3H3 251 aaKnown RBP0.79□□□□□ -2.28
CPSF3-205ENST00000489629 EFCAB1Q9HAE3 211 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 IL36BQ9NZH7 164 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 FUT9Q9Y231 359 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 PRELID3BQ9Y3B1 194 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 CUL9Q8IWT3 2517 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 CCDC144AA2RUR9 1427 aa0.79□□□□□ -2.28
CPSF3-205ENST00000489629 TRAV7A0A075B6U4 112 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 TRAV41A0A0B4J266 112 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 IGHV1-18A0A0C4DH31 117 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 A0A0D9SEW6 157 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 A0A0J9YW62 118 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ARRDC5A6NEK1 342 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 GGT3PA6NGU5 568 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 OR4C46A6NHA9 309 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF860A6NHJ4 632 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 C2orf74A8MZ97 194 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 J3QQQ9 107 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF737O75373 536 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 IGKV1-5P01602 117 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 HLA-DRB1P01911 266 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 TTRP02766 147 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 PPBPP02775 128 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 PRM2P04554 102 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 KCNE1P15382 129 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 HINT1P49773 126 aaPredicted RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 IDH3GP51553 393 aaPredicted RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 AP3S2P59780 193 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 TPI1P60174 286 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 RPL26P61254 145 aaKnown RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 SNRPD2P62316 118 aaKnown RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 POLR2GP62487 172 aaKnown RBP eCLIP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 SLC38A11Q08AI6 406 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 SRSF6Q13247 344 aaKnown RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF705AQ6ZN79 300 aaPredicted RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 Q6ZTI0 123 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 OR5J2Q8NH18 312 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ACOT12Q8WYK0 555 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 WDR61Q9GZS3 305 aaKnown RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 C14orf105Q9NVL8 296 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 RPL26L1Q9UNX3 145 aaKnown RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF532Q9HCE3 1301 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 FLT4P35916 1363 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 KIF24Q5T7B8 1368 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ROBO3Q96MS0 1386 aa0.78□□□□□ -2.28
CPSF3-205ENST00000489629 DENND4BO75064 1496 aaPredicted RBP0.78□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF462Q96JM2 2506 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 USP24Q9UPU5 2620 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 IGHV3-64A0A075B6Q5 118 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 TRAV38-1A0A0B4J264 116 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 TRAV26-2A0A0B4J265 109 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 A0A1B0GW54 56 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 H7C2G1 150 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 KLRC4O43908 158 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 FADS1O60427 444 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 C1QCP02747 245 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 IFNA6P05013 189 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 CD79AP11912 226 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 OMPP47874 163 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 RAP1GDS1P52306 607 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 CEBPGP53567 150 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 DEFA3P59666 94 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 SUPT4H1P63272 117 aaKnown RBP0.77□□□□□ -2.29
CPSF3-205ENST00000489629 CCL20P78556 96 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 CCL7P80098 99 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 ERHP84090 104 aaKnown RBP0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms