RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 C5orf64Q2M2E5 130 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 TEX261Q6UWH6 196 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 STPG2Q8N412 459 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 OR1S2Q8NGQ3 325 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 NANPQ8TBE9 248 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 ST8SIA2Q92186 375 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 C1RLQ9NZP8 487 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 ITGB1BP2Q9UKP3 347 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 SOX21Q9Y651 276 aaPredicted RBP17.28■□□□□ 0.36
SMC4-221ENST00000489573 U3KQ87 197 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 PDZD2O15018 2839 aa17.27■□□□□ 0.36
SMC4-221ENST00000489573 NCBP2LA6PVI3 153 aaKnown RBP17.27■□□□□ 0.35
SMC4-221ENST00000489573 C15orf62A8K5M9 175 aa17.27■□□□□ 0.35
SMC4-221ENST00000489573 IFNA10P01566 189 aa17.27■□□□□ 0.35
SMC4-221ENST00000489573 RPL27AP46776 148 aaKnown RBP17.27■□□□□ 0.35
SMC4-221ENST00000489573 COMPP49747 757 aaPredicted RBP17.27■□□□□ 0.35
SMC4-221ENST00000489573 GNB1P62873 340 aa17.27■□□□□ 0.35
SMC4-221ENST00000489573 OR5C1Q8NGR4 320 aa17.27■□□□□ 0.35
SMC4-221ENST00000489573 STOML3Q8TAV4 291 aa17.27■□□□□ 0.35
SMC4-221ENST00000489573 WFDC1Q9HC57 220 aa17.27■□□□□ 0.35
SMC4-221ENST00000489573 CGB1A6NKQ9 187 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 INS-IGF2F8WCM5 200 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 CA2P00918 260 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 HBG1P69891 147 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 HBG2P69892 147 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 CLINT1Q14677 625 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 LRRC75BQ2VPJ9 315 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 RPL7L1Q6DKI1 246 aaKnown RBP17.26■□□□□ 0.35
SMC4-221ENST00000489573 HAPLN4Q86UW8 402 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 SLC24A4Q8NFF2 622 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 VPS13CQ709C8 3753 aa17.26■□□□□ 0.35
SMC4-221ENST00000489573 E7EUB6 86 aa17.25■□□□□ 0.35
SMC4-221ENST00000489573 FCN1O00602 326 aa17.25■□□□□ 0.35
SMC4-221ENST00000489573 SCAF4O95104 1147 aaKnown RBP17.25■□□□□ 0.35
SMC4-221ENST00000489573 CFDP00746 253 aaPredicted RBP17.25■□□□□ 0.35
SMC4-221ENST00000489573 TPT1P13693 172 aaKnown RBP17.25■□□□□ 0.35
SMC4-221ENST00000489573 EIF5AP63241 154 aaKnown RBP17.25■□□□□ 0.35
SMC4-221ENST00000489573 OR10W1Q8NGF6 305 aa17.25■□□□□ 0.35
SMC4-221ENST00000489573 SSX3Q99909 188 aa17.25■□□□□ 0.35
SMC4-221ENST00000489573 BORCS7-ASMTA0A0B4J1R7 106 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 A0A1B0GW64 132 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 JTBO76095 146 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 OR8U8P0C7N1 319 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 NPY1RP25929 384 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 ARL16Q0P5N6 197 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 OR8G2PQ6IF36 304 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 ZNF767PQ75MW2 155 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 ZNF680Q8NEM1 530 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 MYO9AB2RTY4 2548 aa17.24■□□□□ 0.35
SMC4-221ENST00000489573 PMS2P5A8MQ11 134 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 IFNA7P01567 189 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 HTR2BP41595 481 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 SSBP2P81877 361 aaPredicted RBP17.23■□□□□ 0.35
SMC4-221ENST00000489573 ERHP84090 104 aaKnown RBP17.23■□□□□ 0.35
SMC4-221ENST00000489573 EXOSC2Q13868 293 aaKnown RBP17.23■□□□□ 0.35
SMC4-221ENST00000489573 AANATQ16613 207 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 MRPL41Q8IXM3 137 aaKnown RBP17.23■□□□□ 0.35
SMC4-221ENST00000489573 Q8N9W7 124 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 OR10P1Q8NGE3 313 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 PIFOQ8TCI5 191 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 SRSF12Q8WXF0 261 aaKnown RBP17.23■□□□□ 0.35
SMC4-221ENST00000489573 ATP5SQ99766 215 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 CREBBPQ92793 2442 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 TNCP24821 2201 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 DFFBO76075 338 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 RAB11AP62491 216 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 SLC38A11Q08AI6 406 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 ZNF266Q14584 549 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 C9orf139Q6ZV77 190 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 BAP18Q8IXM2 172 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 LILRB2Q8N423 598 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 UBAC2Q8NBM4 344 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 TMEM170AQ8WVE7 144 aa17.23■□□□□ 0.35
SMC4-221ENST00000489573 PINX1Q96BK5 328 aaKnown RBP17.23■□□□□ 0.35
SMC4-221ENST00000489573 CNIH1O95406 144 aa17.22■□□□□ 0.35
SMC4-221ENST00000489573 ATP5IP56385 69 aaPredicted RBP17.22■□□□□ 0.35
SMC4-221ENST00000489573 BSXQ3C1V8 233 aa17.22■□□□□ 0.35
SMC4-221ENST00000489573 TEX29Q8N6K0 151 aa17.22■□□□□ 0.35
SMC4-221ENST00000489573 CD5LO43866 347 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 SNCAP37840 140 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 WT1-ASQ06250 92 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 DEFB112Q30KQ8 113 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 ETV3LQ6ZN32 361 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 BCL6BQ8N143 479 aaPredicted RBP17.21■□□□□ 0.35
SMC4-221ENST00000489573 RBM14Q96PK6 669 aaKnown RBP17.21■□□□□ 0.35
SMC4-221ENST00000489573 RASL11BQ9BPW5 248 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 SLC25A33Q9BSK2 321 aa17.21■□□□□ 0.35
SMC4-221ENST00000489573 MDFIC2A0A1B0GVS7 189 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 IGLC7A0M8Q6 106 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 H3BUX3 64 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 OR13C7P0DN81 318 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 RNASE2P10153 161 aaKnown RBP17.2■□□□□ 0.34
SMC4-221ENST00000489573 KRTAP1-1Q07627 177 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 FXYD3Q14802 87 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 C2orf83Q53S99 150 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 ALKAL2Q6UX46 152 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 HSD17B13Q7Z5P4 300 aaPredicted RBP17.2■□□□□ 0.34
SMC4-221ENST00000489573 PHYHIPLQ96FC7 376 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 SRSF8Q9BRL6 282 aaKnown RBP17.2■□□□□ 0.34
SMC4-221ENST00000489573 UBQLN2Q9UHD9 624 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms