RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 DUSP13Q9UII6 198 aa5.21□□□□□ -1.58
VPS13D-209ENST00000487188 POLDIP2Q9Y2S7 368 aa5.21□□□□□ -1.58
VPS13D-209ENST00000487188 TRBV6-6A0A0A6YYG2 114 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 TRAV8-6A0A0B4J262 113 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 DEFB108AA8MXU0 73 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 H3BUT2 72 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 J3QT63 122 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 CHEK1O14757 476 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 OR2H2O95918 312 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 GPR12P47775 334 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 SSR4P51571 173 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 RAC3P60763 192 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 RPL30P62888 115 aaKnown RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 PLGLB1Q02325 96 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 TMEM249Q2WGJ8 235 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 NAA38Q9BRA0 125 aaKnown RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 C1QTNF5Q9BXJ0 243 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 CHRNA10Q9GZZ6 450 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 TNFRSF19Q9NS68 423 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 ZNF355PQ9NSJ1 428 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 EPOPA6NHQ4 379 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 H0YJW9 148 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 GOSR1O95249 250 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 HLA-DRB1P01911 266 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 P04436 131 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 CCL3P10147 92 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 LIFP15018 202 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 NHLH1Q02575 133 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 SRYQ05066 204 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 MRPL49Q13405 166 aaKnown RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 EFNB3Q15768 340 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 PRR31Q5SQ13 230 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 SPATA46Q5T0L3 261 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 MIR17HGQ75NE6 70 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 FADS6Q8N9I5 356 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 C11orf52Q96A22 123 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 PLPPR2Q96GM1 343 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 CDX2Q99626 313 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 ABI3Q9P2A4 366 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 GNG12Q9UBI6 72 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 FAM186AA6NE01 2351 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 KMT2EQ8IZD2 1858 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 SH2D7A6NKC9 451 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 PMS2P5A8MQ11 134 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 NPIPB11E5RHQ5 1161 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 J3QR89 54 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 FOXH1O75593 365 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 GRPP07492 148 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 CSN3P07498 182 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 GATA2P23769 480 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 UBE2L3P68036 154 aaKnown RBP5.2□□□□□ -1.58
VPS13D-209ENST00000487188 ARG2P78540 354 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 VWC2Q2TAL6 325 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 ABHD12Q8N2K0 398 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 RFESDQ8TAC1 157 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 SLC25A40Q8TBP6 338 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 ZC2HC1AQ96GY0 325 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 PMCHL2Q9BQD1 86 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 COMMD5Q9GZQ3 224 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 MMP17Q9ULZ9 603 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 MPC1Q9Y5U8 109 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 R4GN57 208 aa5.2□□□□□ -1.58
VPS13D-209ENST00000487188 FAM231BA6NCW3 169 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SYS1-DBNDD2H3BUS1 97 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 TNFSF15O95150 251 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 CELA3BP08861 270 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 IGFBP7Q16270 282 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 TBR1Q16650 682 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 WDR74Q6RFH5 385 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-209ENST00000487188 HSPB8Q9UJY1 196 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 HILPDAQ9Y5L2 63 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 OR51B2Q9Y5P1 312 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 FBLL1A6NHQ2 334 aaKnown RBP5.19□□□□□ -1.58
VPS13D-209ENST00000487188 LMO7DNF2Z398 122 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-209ENST00000487188 CDIPTO14735 213 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SMPD2O60906 423 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 ZNF137PP52743 207 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SEC11AP67812 179 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SMAGPQ0VAQ4 97 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SPACA3Q8IXA5 215 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 Q8IYB0 196 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 NEUROG1Q92886 237 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SARAFQ96BY9 339 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 DAZAP1Q96EP5 407 aaKnown RBP5.19□□□□□ -1.58
VPS13D-209ENST00000487188 ZNF576Q9H609 170 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 ZNF207O43670 478 aaKnown RBP5.19□□□□□ -1.58
VPS13D-209ENST00000487188 ARR3P36575 388 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 PPOXP50336 477 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 TCTAP57738 103 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 TMEM97Q5BJF2 176 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 C5orf17Q8NAS9 161 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 OR2K2Q8NGT1 345 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 OR10AG1Q8NH19 301 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 OR10D3Q8NH80 312 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SPCS1Q9Y6A9 102 aa5.19□□□□□ -1.58
VPS13D-209ENST00000487188 SPINT2O43291 252 aa5.18□□□□□ -1.58
VPS13D-209ENST00000487188 LIPFP07098 398 aa5.18□□□□□ -1.58
VPS13D-209ENST00000487188 CELA2AP08217 269 aa5.18□□□□□ -1.58
VPS13D-209ENST00000487188 NBEAP1P0C6P0 100 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms