RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 HINT2Q9BX68 163 aa16.17■□□□□ 0.18
USP40-215ENST00000484528 ANAPC10Q9UM13 185 aa16.17■□□□□ 0.18
USP40-215ENST00000484528 NSG2Q9Y328 171 aa16.17■□□□□ 0.18
USP40-215ENST00000484528 MARCH11A6NNE9 402 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 TMEM127O75204 238 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 PGLYRP1O75594 196 aaPredicted RBP16.16■□□□□ 0.18
USP40-215ENST00000484528 LPAR6P43657 344 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 WT1-ASQ06250 92 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 PLET1Q6UQ28 207 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 CROCCP3Q8IVE0 287 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 GDPD1Q8N9F7 314 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 BORCS5Q969J3 196 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 YIPF6Q96EC8 236 aa16.16■□□□□ 0.18
USP40-215ENST00000484528 IGHV3-21A0A0B4J1V1 117 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 TEX50A0A1B0GTY4 177 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 KRASP01116 189 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 TRAPPC2P0DI81 140 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 TRAPPC2BP0DI82 140 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 F2RP25116 425 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 ZNF585BQ52M93 769 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 DHRS11Q6UWP2 260 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 FCAMRQ8WWV6 532 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 SRSF8Q9BRL6 282 aaKnown RBP16.15■□□□□ 0.18
USP40-215ENST00000484528 THYN1Q9P016 225 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 LYSTQ99698 3801 aa16.15■□□□□ 0.18
USP40-215ENST00000484528 OR2T8A6NH00 312 aa16.14■□□□□ 0.17
USP40-215ENST00000484528 TGOLN2O43493 480 aa16.14■□□□□ 0.17
USP40-215ENST00000484528 PTBP1P26599 531 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP40-215ENST00000484528 G6PCP35575 357 aa16.14■□□□□ 0.17
USP40-215ENST00000484528 TAS2R46P59540 309 aa16.14■□□□□ 0.17
USP40-215ENST00000484528 SLC25A24Q6NUK1 477 aa16.14■□□□□ 0.17
USP40-215ENST00000484528 OR1L8Q8NGR8 309 aa16.14■□□□□ 0.17
USP40-215ENST00000484528 EIF4EP06730 217 aaKnown RBP16.13■□□□□ 0.17
USP40-215ENST00000484528 SERPINE2P07093 398 aa16.13■□□□□ 0.17
USP40-215ENST00000484528 HLA-DMAP28067 261 aa16.13■□□□□ 0.17
USP40-215ENST00000484528 PRSS3P35030 304 aa16.13■□□□□ 0.17
USP40-215ENST00000484528 HRH1P35367 487 aa16.13■□□□□ 0.17
USP40-215ENST00000484528 MFAP2P55001 183 aa16.13■□□□□ 0.17
USP40-215ENST00000484528 DGCR14Q96DF8 476 aaKnown RBP16.13■□□□□ 0.17
USP40-215ENST00000484528 VCX3AQ9NNX9 186 aa16.13■□□□□ 0.17
USP40-215ENST00000484528 NAT1P18440 290 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 PHLDA2Q53GA4 152 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 THOC7Q6I9Y2 204 aaKnown RBP16.12■□□□□ 0.17
USP40-215ENST00000484528 RBPMS2Q6ZRY4 209 aaKnown RBP16.12■□□□□ 0.17
USP40-215ENST00000484528 CMTM1Q8IZ96 169 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 TSPAN14Q8NG11 270 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 VN1R17PQ8TDU5 208 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 MARC2Q969Z3 335 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 NDUFA4L2Q9NRX3 87 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 UFC1Q9Y3C8 167 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 OR51B2Q9Y5P1 312 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 DNAH1Q9P2D7 4330 aa16.12■□□□□ 0.17
USP40-215ENST00000484528 IGHV3OR16-8A0A075B7F1 116 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 GPR31O00270 319 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 CYB5BO43169 146 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 FGF2P09038 288 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 C8orf88P0DMB2 117 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 LYSMD2Q8IV50 215 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 OR1L6Q8NGR2 347 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 OR6F1Q8NGZ6 308 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 TMEM190Q8WZ59 177 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 LSM10Q969L4 123 aaKnown RBP16.11■□□□□ 0.17
USP40-215ENST00000484528 GGTLC1Q9BX51 225 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 ZNF436Q9C0F3 470 aaPredicted RBP16.11■□□□□ 0.17
USP40-215ENST00000484528 MRPL27Q9P0M9 148 aaKnown RBP16.11■□□□□ 0.17
USP40-215ENST00000484528 COMMD3Q9UBI1 195 aa16.11■□□□□ 0.17
USP40-215ENST00000484528 F11RQ9Y624 299 aaKnown RBP16.11■□□□□ 0.17
USP40-215ENST00000484528 A0A087WXM4 84 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 SNAPC5O75971 98 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 NCS1P62166 190 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 ANKRD55Q3KP44 614 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 HSD17B13Q7Z5P4 300 aaPredicted RBP16.1■□□□□ 0.17
USP40-215ENST00000484528 SNX29P2Q8IUI4 249 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 UBAC2Q8NBM4 344 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 SLC25A46Q96AG3 418 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 CHRDL1Q9BU40 450 aa16.1■□□□□ 0.17
USP40-215ENST00000484528 DBX1A6NMT0 343 aa16.09■□□□□ 0.17
USP40-215ENST00000484528 ELLP55199 621 aaPredicted RBP16.09■□□□□ 0.17
USP40-215ENST00000484528 GPX8Q8TED1 209 aa16.09■□□□□ 0.17
USP40-215ENST00000484528 SCARB1Q8WTV0 552 aa16.09■□□□□ 0.17
USP40-215ENST00000484528 C21orf62Q9NYP8 219 aa16.09■□□□□ 0.17
USP40-215ENST00000484528 UBQLN2Q9UHD9 624 aa16.09■□□□□ 0.17
USP40-215ENST00000484528 LOC102724200A0A096LPH7 203 aaPredicted RBP16.08■□□□□ 0.16
USP40-215ENST00000484528 TRAV25A0A0B4J276 109 aa16.08■□□□□ 0.16
USP40-215ENST00000484528 ZNF207O43670 478 aaKnown RBP16.08■□□□□ 0.16
USP40-215ENST00000484528 TSPAN5P62079 268 aa16.08■□□□□ 0.16
USP40-215ENST00000484528 IL17DQ8TAD2 202 aa16.08■□□□□ 0.16
USP40-215ENST00000484528 BSCL2Q96G97 398 aaPredicted RBP16.08■□□□□ 0.16
USP40-215ENST00000484528 C20orf24Q9BUV8 137 aa16.08■□□□□ 0.16
USP40-215ENST00000484528 PRNDQ9UKY0 176 aa16.08■□□□□ 0.16
USP40-215ENST00000484528 F8W735 103 aaPredicted RBP16.07■□□□□ 0.16
USP40-215ENST00000484528 K7EIM0 57 aa16.07■□□□□ 0.16
USP40-215ENST00000484528 TNFAIP8O95379 198 aa16.07■□□□□ 0.16
USP40-215ENST00000484528 VBP1P61758 197 aa16.07■□□□□ 0.16
USP40-215ENST00000484528 Q56UQ5 140 aa16.07■□□□□ 0.16
USP40-215ENST00000484528 C5orf66Q9H5L9 145 aa16.07■□□□□ 0.16
USP40-215ENST00000484528 DAZ1Q9NQZ3 744 aaKnown RBP16.07■□□□□ 0.16
USP40-215ENST00000484528 C15orf61A6NNL5 157 aa16.06■□□□□ 0.16
USP40-215ENST00000484528 JTBO76095 146 aa16.06■□□□□ 0.16
USP40-215ENST00000484528 ADMP35318 185 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms