RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ATP5SQ99766 215 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 VPS25Q9BRG1 176 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 SAMD10Q9BYL1 202 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 TXNIPQ9H3M7 391 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 CALHM2Q9HA72 323 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 LHX9Q9NQ69 397 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 PNO1Q9NRX1 252 aaKnown RBP4.01□□□□□ -1.77
USP40-213ENST00000483216 TMEM106BQ9NUM4 274 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 LSM5Q9Y4Y9 91 aaKnown RBP4.01□□□□□ -1.77
USP40-213ENST00000483216 PLXNA2O75051 1894 aa4.01□□□□□ -1.77
USP40-213ENST00000483216 RAI1Q7Z5J4 1906 aaPredicted RBP4□□□□□ -1.77
USP40-213ENST00000483216 A0A1B0GV72 72 aa4□□□□□ -1.77
USP40-213ENST00000483216 MEIS3P1A6NDR6 274 aa4□□□□□ -1.77
USP40-213ENST00000483216 E9PLD3 99 aa4□□□□□ -1.77
USP40-213ENST00000483216 ALOX12BO75342 701 aa4□□□□□ -1.77
USP40-213ENST00000483216 CBR3O75828 277 aa4□□□□□ -1.77
USP40-213ENST00000483216 IGLV1-47P01700 117 aa4□□□□□ -1.77
USP40-213ENST00000483216 ASAH2BP0C7U1 165 aa4□□□□□ -1.77
USP40-213ENST00000483216 TCN2P20062 427 aa4□□□□□ -1.77
USP40-213ENST00000483216 VDAC1P21796 283 aa4□□□□□ -1.77
USP40-213ENST00000483216 KRTAP5-9P26371 169 aa4□□□□□ -1.77
USP40-213ENST00000483216 CCR2P41597 374 aa4□□□□□ -1.77
USP40-213ENST00000483216 AKR1C3P42330 323 aa4□□□□□ -1.77
USP40-213ENST00000483216 OR3A4PP47883 348 aa4□□□□□ -1.77
USP40-213ENST00000483216 RAB7AP51149 207 aa4□□□□□ -1.77
USP40-213ENST00000483216 EFNB2P52799 333 aa4□□□□□ -1.77
USP40-213ENST00000483216 PPP1CBP62140 327 aa4□□□□□ -1.77
USP40-213ENST00000483216 EWSR1Q01844 656 aaKnown RBP eCLIP4□□□□□ -1.77
USP40-213ENST00000483216 FUT7Q11130 342 aa4□□□□□ -1.77
USP40-213ENST00000483216 ELAVL3Q14576 367 aaKnown RBP4□□□□□ -1.77
USP40-213ENST00000483216 ZNF77Q15935 545 aa4□□□□□ -1.77
USP40-213ENST00000483216 TMEM249Q2WGJ8 235 aa4□□□□□ -1.77
USP40-213ENST00000483216 ACTL10Q5JWF8 245 aa4□□□□□ -1.77
USP40-213ENST00000483216 C1orf140Q5VVS0 124 aa4□□□□□ -1.77
USP40-213ENST00000483216 MRPL54Q6P161 138 aaKnown RBP4□□□□□ -1.77
USP40-213ENST00000483216 TEX43Q6ZNM6 134 aa4□□□□□ -1.77
USP40-213ENST00000483216 RFLNAQ6ZTI6 216 aa4□□□□□ -1.77
USP40-213ENST00000483216 COX15Q7KZN9 410 aa4□□□□□ -1.77
USP40-213ENST00000483216 LINC01551Q86U37 167 aa4□□□□□ -1.77
USP40-213ENST00000483216 TMEM25Q86YD3 366 aa4□□□□□ -1.77
USP40-213ENST00000483216 ZNF695Q8IW36 515 aa4□□□□□ -1.77
USP40-213ENST00000483216 CYB561D1Q8N8Q1 229 aa4□□□□□ -1.77
USP40-213ENST00000483216 ZNF709Q8N972 641 aa4□□□□□ -1.77
USP40-213ENST00000483216 ZNF740Q8NDX6 193 aa4□□□□□ -1.77
USP40-213ENST00000483216 OR51A4Q8NGJ6 313 aa4□□□□□ -1.77
USP40-213ENST00000483216 OR51T1Q8NGJ9 327 aa4□□□□□ -1.77
USP40-213ENST00000483216 OR4X1Q8NH49 305 aa4□□□□□ -1.77
USP40-213ENST00000483216 RTN4IP1Q8WWV3 396 aaPredicted RBP4□□□□□ -1.77
USP40-213ENST00000483216 BORCS7Q96B45 105 aa4□□□□□ -1.77
USP40-213ENST00000483216 GABRG3Q99928 467 aa4□□□□□ -1.77
USP40-213ENST00000483216 SMIM7Q9BQ49 75 aa4□□□□□ -1.77
USP40-213ENST00000483216 PMCHL2Q9BQD1 86 aa4□□□□□ -1.77
USP40-213ENST00000483216 WFDC6Q9BQY6 131 aa4□□□□□ -1.77
USP40-213ENST00000483216 RTBDNQ9BSG5 229 aaPredicted RBP4□□□□□ -1.77
USP40-213ENST00000483216 CHRDL1Q9BU40 450 aa4□□□□□ -1.77
USP40-213ENST00000483216 ZNF286AQ9HBT8 521 aa4□□□□□ -1.77
USP40-213ENST00000483216 LPAR2Q9HBW0 351 aa4□□□□□ -1.77
USP40-213ENST00000483216 WFDC1Q9HC57 220 aa4□□□□□ -1.77
USP40-213ENST00000483216 SLC39A9Q9NUM3 307 aa4□□□□□ -1.77
USP40-213ENST00000483216 PLEKHJ1Q9NW61 149 aa4□□□□□ -1.77
USP40-213ENST00000483216 SOHLH2Q9NX45 425 aa4□□□□□ -1.77
USP40-213ENST00000483216 TAS2R4Q9NYW5 299 aa4□□□□□ -1.77
USP40-213ENST00000483216 CD84Q9UIB8 345 aa4□□□□□ -1.77
USP40-213ENST00000483216 B9D1Q9UPM9 204 aa4□□□□□ -1.77
USP40-213ENST00000483216 SLC22A13Q9Y226 551 aa4□□□□□ -1.77
USP40-213ENST00000483216 CCL26Q9Y258 94 aa4□□□□□ -1.77
USP40-213ENST00000483216 TBL2Q9Y4P3 447 aaKnown RBP4□□□□□ -1.77
USP40-213ENST00000483216 TRAPPC1Q9Y5R8 145 aa4□□□□□ -1.77
USP40-213ENST00000483216 LY96Q9Y6Y9 160 aa4□□□□□ -1.77
USP40-213ENST00000483216 URGCP-MRPS24S4R325 110 aa4□□□□□ -1.77
USP40-213ENST00000483216 A0A0C4DFX4 3053 aa4□□□□□ -1.77
USP40-213ENST00000483216 SZT2Q5T011 3432 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 KIR2DS1A0A191URI9 304 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 LOC107986453A0A1B0GWG9 222 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 A0A1W2PQD3 144 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 ZNF850A8MQ14 1090 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 DEGS1O15121 323 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 TCF21O43680 179 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 CD55P08174 381 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 LIPCP11150 499 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 COX5AP20674 150 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 HNRNPA2B1P22626 353 aaKnown RBP3.99□□□□□ -1.77
USP40-213ENST00000483216 ATP6V0CP27449 155 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 PSMB5P28074 263 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 ACAA2P42765 397 aaKnown RBP3.99□□□□□ -1.77
USP40-213ENST00000483216 KIR2DS4P43632 304 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 NPBWR2P48146 333 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 HNRNPA3P51991 378 aaKnown RBP3.99□□□□□ -1.77
USP40-213ENST00000483216 PIGPP57054 158 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 MEF2BQ02080 365 aaPredicted RBP3.99□□□□□ -1.77
USP40-213ENST00000483216 FMODQ06828 376 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 Q0VG73 95 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 KIR2DS1Q14954 304 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 HIST3H3Q16695 136 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 RTL8BQ17RB0 113 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 CCSMST1Q4G0I0 132 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 PDZD11Q5EBL8 140 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 OR10J3Q5JRS4 329 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 SPATA46Q5T0L3 261 aa3.99□□□□□ -1.77
USP40-213ENST00000483216 RASL11AQ6T310 242 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms