RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 FABP3P05413 133 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 REG1AP05451 166 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 CDC34P49427 236 aaPredicted RBP3.25□□□□□ -1.89
USP4-209ENST00000475873 EIF2B2P49770 351 aaKnown RBP3.25□□□□□ -1.89
USP4-209ENST00000475873 VSNL1P62760 191 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 SLAQ13239 276 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 GAMTQ14353 236 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 RSU1Q15404 277 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 MPV17LQ2QL34 196 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 TMEM41BQ5BJD5 291 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 GLYATQ6IB77 296 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 CGB2Q6NT52 195 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 PLET1Q6UQ28 207 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 OR2G2Q8NGZ5 317 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 LHFPL5Q8TAF8 219 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 ACOT12Q8WYK0 555 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 OR14A2Q96R54 314 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 UPK3BQ9BT76 320 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 C20orf24Q9BUV8 137 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 ADI1Q9BV57 179 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 MS4A6AQ9H2W1 248 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 CLN6Q9NWW5 311 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 IL36GQ9NZH8 169 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 OR1A1Q9P1Q5 309 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 RPH3ALQ9UNE2 315 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 RBMX2Q9Y388 322 aaKnown RBP3.25□□□□□ -1.89
USP4-209ENST00000475873 TRBV7-1A0A0A6YYK4 115 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 IGHV7-4-1A0A0J9YVY3 117 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 UBE2QL1A1L167 161 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OR2T8A6NH00 312 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 METTL15A6NJ78 407 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 KRTAP9-7A8MTY7 169 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 ANKRD65E5RJM6 399 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 ZNF670-ZNF695F2Z2N8 137 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 H3BN98 237 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 K7EMT4 169 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 M0R1X1 148 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 EREGO14944 169 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 NUPL2O15504 423 aaKnown RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 PRKYO43930 277 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 WBP4O75554 376 aaKnown RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 DFFBO76075 338 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 APOHP02749 345 aaPredicted RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 ISG15P05161 165 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OR4E1P0C645 316 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OCM2P0CE71 109 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OCMP0CE72 109 aaPredicted RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 SAA1P0DJI8 122 aaPredicted RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 SRMP19623 302 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 SERPINA2P20848 420 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 RASSF2P50749 326 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 CMC4P56277 68 aaPredicted RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 UBE2KP61086 200 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 BAK1Q16611 211 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 ESRGQ1W209 222 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 TRIM16LQ309B1 348 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 TP53I3Q53FA7 332 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 RNASE12Q5GAN4 147 aaKnown RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 ACTL10Q5JWF8 245 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 UBE2UQ5VVX9 321 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 SCXQ7RTU7 201 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 ARHGAP24Q8N264 748 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 STX19Q8N4C7 294 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 TEX45Q8NA69 505 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OR8J1Q8NGP2 316 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OR13C3Q8NGS6 347 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 GLMPQ8WWB7 406 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 IL1F10Q8WWZ1 152 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 GALMQ96C23 342 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 SLC7A6OSQ96CW6 309 aaPredicted RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 PELI1Q96FA3 418 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 RRNAD1Q96FB5 475 aaKnown RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 NSL1Q96IY1 281 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 OR2A7Q96R45 310 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 FEVQ99581 238 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 SPIN2AQ99865 258 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 SPIN2BQ9BPZ2 258 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 RAB9BQ9NP90 201 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 SAR1AQ9NR31 198 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 PLCXD1Q9NUJ7 323 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 ABCD2Q9UBJ2 740 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 CLEC2DQ9UHP7 191 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 DIMT1Q9UNQ2 313 aaKnown RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 PRELID3BQ9Y3B1 194 aa3.24□□□□□ -1.89
USP4-209ENST00000475873 YTHDF2Q9Y5A9 579 aaKnown RBP3.24□□□□□ -1.89
USP4-209ENST00000475873 IGLV5-52A0A0A0MRZ9 124 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 OR4C45A6NMZ5 311 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 MARCH11A6NNE9 402 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 C15orf62A8K5M9 175 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 LINC00587B1AMM8 73 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 MCRIP1C9JLW8 97 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 F8W036 122 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 NDUFA4O00483 81 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 ITGB1BP1O14713 200 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 RGS13O14921 159 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 ARPC2O15144 300 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 APOA2P02652 100 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 PRM2P04554 102 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 ZNF688P0C7X2 276 aa3.23□□□□□ -1.89
USP4-209ENST00000475873 ALDH3B2P48448 385 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms