RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	OR51B2	Q9Y5P1	312 aa		18.38	■□□□□ 0.53
CPNE1-223	ENST00000475146		S4R3C0	116 aa		18.38	■□□□□ 0.53
CPNE1-223	ENST00000475146	TEX50	A0A1B0GTY4	177 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	IGHV3-23	P01764	117 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	SERPINE2	P07093	398 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	CD69	Q07108	199 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	CADM3	Q8N126	398 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	ZFAND1	Q8TCF1	268 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	MRGPRF	Q96AM1	343 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	TSC22D3	Q99576	134 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	COPZ2	Q9P299	210 aa		18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	RSL24D1	Q9UHA3	163 aa	Known RBP	18.37	■□□□□ 0.53
CPNE1-223	ENST00000475146	IGLV11-55	A0A075B6I3	123 aa		18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	PPP5D1	E7EU14	171 aa		18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	PTBP1	P26599	531 aa	Known RBP eCLIP	18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	H2BFWT	Q7Z2G1	175 aa		18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	OR13C8	Q8NGS7	320 aa		18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	EEF1AKMT3	Q96AZ1	226 aa		18.36	■□□□□ 0.53
CPNE1-223	ENST00000475146	DISC1	C4P0D8	188 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146		H0Y980	276 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	IGKV1-39	P01597	117 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	IGKV1D-39	P04432	117 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	AKAIN1	P0CW23	69 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	OR13C7	P0DN81	318 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	TNFSF8	P32971	234 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	CLEC19A	Q6UXS0	136 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	CCDC71L	Q8N9Z2	235 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	MARCH1	Q8TCQ1	289 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	LSM10	Q969L4	123 aa	Known RBP	18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	SEC22A	Q96IW7	307 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	NXF2	Q9GZY0	626 aa	Known RBP	18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	NDUFA4L2	Q9NRX3	87 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	FKBP11	Q9NYL4	201 aa		18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	LSM4	Q9Y4Z0	139 aa	Known RBP	18.35	■□□□□ 0.53
CPNE1-223	ENST00000475146	FABP12	A6NFH5	140 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	C15orf61	A6NNL5	157 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	CYB5B	O43169	146 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	GP9	P14770	177 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	MECP2	P51608	486 aa	Known RBP	18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	KLK9	Q2XQG4	91 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	GDPD1	Q8N9F7	314 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	OR4C16	Q8NGL9	310 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	OR5B3	Q8NH48	314 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	CCDC140	Q96MF4	163 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	TP53RK	Q96S44	253 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	B9D2	Q9BPU9	175 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	PEMT	Q9UBM1	199 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	KLK9	Q9UKQ9	250 aa		18.34	■□□□□ 0.53
CPNE1-223	ENST00000475146	SORL1	Q92673	2214 aa		18.33	■□□□□ 0.53
CPNE1-223	ENST00000475146	C3orf85	A0A1B0GTC6	90 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	MFSD2B	A6NFX1	497 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	GSTZ1	O43708	216 aa	Predicted RBP	18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	GGCT	O75223	188 aa	Known RBP	18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	IGLV1-51	P01701	117 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	WT1-AS	Q06250	92 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	IL34	Q6ZMJ4	242 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	OR4A16	Q8NH70	328 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	CXorf58	Q96LI9	332 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	TMEM14B	Q9NUH8	114 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	THYN1	Q9P016	225 aa		18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	C14orf166	Q9Y224	244 aa	Known RBP	18.33	■□□□□ 0.52
CPNE1-223	ENST00000475146	DBX1	A6NMT0	343 aa		18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	HLA-A	P01891	365 aa	Known RBP	18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	CTSD	P07339	412 aa	Predicted RBP	18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	ARL3	P36405	182 aa		18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	TRIM16L	Q309B1	348 aa		18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	TMEM56	Q96MV1	263 aa		18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	RBM38	Q9H0Z9	239 aa	Known RBP	18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	DMRT1	Q9Y5R6	373 aa		18.32	■□□□□ 0.52
CPNE1-223	ENST00000475146	TRBV7-1	A0A0A6YYK4	115 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	OR2C1	O95371	312 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	CSN3	P07498	182 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	AKR1C2	P52895	323 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	SP6	Q3SY56	376 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	SLC25A24	Q6NUK1	477 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	SMAD5-AS1	Q9Y6J3	95 aa		18.31	■□□□□ 0.52
CPNE1-223	ENST00000475146	ANKRD20A5P	A0PJZ0	165 aa		18.3	■□□□□ 0.52
CPNE1-223	ENST00000475146	PRRT1	Q99946	306 aa		18.3	■□□□□ 0.52
CPNE1-223	ENST00000475146	SOST	Q9BQB4	213 aa		18.3	■□□□□ 0.52
CPNE1-223	ENST00000475146	F11R	Q9Y624	299 aa	Known RBP	18.3	■□□□□ 0.52
CPNE1-223	ENST00000475146	ATG12	O94817	140 aa		18.29	■□□□□ 0.52
CPNE1-223	ENST00000475146	S100A5	P33763	92 aa		18.29	■□□□□ 0.52
CPNE1-223	ENST00000475146	IZUMO4	Q1ZYL8	232 aa		18.29	■□□□□ 0.52
CPNE1-223	ENST00000475146	OR51S1	Q8NGJ8	323 aa		18.29	■□□□□ 0.52
CPNE1-223	ENST00000475146	ZC4H2	Q9NQZ6	224 aa		18.29	■□□□□ 0.52
CPNE1-223	ENST00000475146	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	IGKV1-5	P01602	117 aa		18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	CLEC3B	P05452	202 aa		18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	GPR183	P32249	361 aa		18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	SURF2	Q15527	256 aa	Predicted RBP	18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	RNASE11	Q8TAA1	199 aa	Known RBP	18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	ZNF502	Q8TBZ5	544 aa		18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	MCUB	Q9NWR8	336 aa		18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	SIGLEC8	Q9NYZ4	499 aa		18.28	■□□□□ 0.52
CPNE1-223	ENST00000475146	UCP1	P25874	307 aa		18.27	■□□□□ 0.52
CPNE1-223	ENST00000475146	PYDC2	Q56P42	97 aa		18.27	■□□□□ 0.52
CPNE1-223	ENST00000475146	C11orf87	Q6NUJ2	197 aa		18.27	■□□□□ 0.52
CPNE1-223	ENST00000475146	DYNLRB2	Q8TF09	96 aa		18.27	■□□□□ 0.52
CPNE1-223	ENST00000475146	RTBDN	Q9BSG5	229 aa	Predicted RBP	18.27	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms