RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 IMPG1Q17R60 797 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 HIST2H3PS2Q5TEC6 136 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 C7orf65Q6ZTY9 151 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 ZNF676Q8N7Q3 588 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 ERMAPQ96PL5 475 aaPredicted RBP0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 EFCAB1Q9HAE3 211 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 CISHQ9NSE2 258 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 CMTM6Q9NX76 183 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 IL36BQ9NZH7 164 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 MALRD1Q5VYJ5 2156 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 ADCY9O60503 1353 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 GLI3P10071 1580 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 MEIS3P1A6NDR6 274 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 M0R036 132 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 ORC5O43913 435 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 IGHV3-7P01780 117 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 TRGC1P0CF51 173 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 SULT1A3P0DMM9 295 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 SULT1A4P0DMN0 295 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 SPCS3P61009 180 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 UBE2IP63279 158 aaKnown RBP0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 RPL18Q07020 188 aaKnown RBP0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 GRK1Q15835 563 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 CCDC122Q5T0U0 273 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 Q6ZS49 121 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 TMEM86AQ8N2M4 240 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 Q96M85 177 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 CST9LQ9H4G1 147 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 KIF24Q5T7B8 1368 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 STRCQ7RTU9 1775 aa0.93□□□□□ -2.26
CCDC88A-212ENST00000474059 DOCK10Q96BY6 2186 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 TRBV20OR9-2A0A075B6H5 130 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 MEIKINA0A087WXM9 373 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 TRBV10-2A0A0K0K1G8 114 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 IGKV2-29A2NJV5 120 aaPredicted RBP0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 NOS1APO75052 506 aaPredicted RBP0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 C1QAP02745 245 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 PRM2P04554 102 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 IFNA16P05015 189 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 AKR1C3P42330 323 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 SULT1A1P50225 295 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 CCL20P78556 96 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 MOGQ16653 247 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 ARHGAP11BQ3KRB8 267 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 FAM173BQ6P4H8 233 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 OR8J2Q8NGG1 315 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 MBD3L1Q8WWY6 194 aa0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 IMP4Q96G21 291 aaKnown RBP0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 NAA38Q9BRA0 125 aaKnown RBP0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 WDR61Q9GZS3 305 aaKnown RBP0.92□□□□□ -2.26
CCDC88A-212ENST00000474059 MYH11P35749 1972 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 HECW1Q76N89 1606 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 IGKV1D-43A0A0B4J1Z2 117 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 TRBV6-5A0A0K0K1A5 114 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 SMIM23A6NLE4 172 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 FABP5P3A8MUU1 101 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 IBA57-AS1B1ANH7 110 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 PSMD12O00232 456 aaPredicted RBP0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 SLC22A1O15245 554 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 CHP2O43745 196 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 LYPLA2O95372 231 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 CRPP02741 224 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 CD79AP11912 226 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 SUPT4H1P63272 117 aaKnown RBP0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 ITGB3BPQ13352 177 aaPredicted RBP0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 KISS1Q15726 138 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 AADACL3Q5VUY0 350 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 SYPL2Q5VXT5 272 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 Q6ZSA8 131 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 FP248Q71RG6 208 aaPredicted RBP0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 DEFB119Q8N690 84 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 C9orf163Q8N9P6 203 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 MRPL30Q8TCC3 161 aaKnown RBP0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 UBAP1Q9NZ09 502 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 TP73-AS1Q9UF72 201 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 PKIGQ9Y2B9 76 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 V9GYY5 206 aaPredicted RBP0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 HECW2Q9P2P5 1572 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 NUMA1Q14980 2115 aa0.91□□□□□ -2.26
CCDC88A-212ENST00000474059 CCDC88AQ3V6T2 1871 aa0.9□□□□□ -2.26
CCDC88A-212ENST00000474059 WRNQ14191 1432 aaPredicted RBP eCLIP0.9□□□□□ -2.26
CCDC88A-212ENST00000474059 IRGMA1A4Y4 181 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 TRAPPC13A5PLN9 417 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 IGKV1-5P01602 117 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HLA-DRB1P01911 266 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 CLPSP04118 112 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 RPS4Y1P22090 263 aaKnown RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H1TP22492 207 aaPredicted RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 NFYAP23511 347 aaPredicted RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BOP23527 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BBP33778 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 EIF2B2P49770 351 aaKnown RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 ZNF80P51504 273 aaPredicted RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BDP58876 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 SNRPD2P62316 118 aaKnown RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BCP62807 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 ELOBQ15370 118 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 NNATQ16517 81 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST2H2BEQ16778 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 Q1T7F1 81 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms