RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OR10D4PQ8NGN7 298 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 H1FXQ92522 213 aaKnown RBP15.59■□□□□ 0.09
VIM-203ENST00000469543 DIRC2Q96SL1 478 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 NPVFQ9HCQ7 196 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 LSM4Q9Y4Z0 139 aaKnown RBP15.59■□□□□ 0.09
VIM-203ENST00000469543 ANKHD1Q8IWZ3 2542 aaKnown RBP15.59■□□□□ 0.09
VIM-203ENST00000469543 NCOR2Q9Y618 2525 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 IGKV1OR2-108A0A075B7D4 117 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 SEC14L6B5MCN3 397 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 H7BYZ3 331 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 IGHV3-48P01763 117 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 IL6RP08887 468 aaPredicted RBP15.59■□□□□ 0.09
VIM-203ENST00000469543 C1QTNF9P0C862 333 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 STPG3Q8N7X2 389 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 OR4X1Q8NH49 305 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 WFIKKN1Q96NZ8 548 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 LRFN3Q9BTN0 628 aa15.59■□□□□ 0.09
VIM-203ENST00000469543 MALRD1Q5VYJ5 2156 aa15.58■□□□□ 0.09
VIM-203ENST00000469543 TRBV24-1A0A075B6N3 115 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 FAM90A9PA6NNJ1 464 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 OPRK1P41145 380 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 THBS3P49746 956 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 TMEM200BQ69YZ2 307 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 SLC25A48Q6ZT89 311 aaKnown RBP15.58■□□□□ 0.08
VIM-203ENST00000469543 MED13LQ71F56 2210 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 TRBV23-1A0A0A0MS06 115 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 TMPRSS3P57727 454 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 RPP30P78346 268 aaKnown RBP15.58■□□□□ 0.08
VIM-203ENST00000469543 FOXC1Q12948 553 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 EFNB3Q15768 340 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 MRPL20Q9BYC9 149 aaKnown RBP15.58■□□□□ 0.08
VIM-203ENST00000469543 SAP30LQ9HAJ7 183 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 SLC35D1Q9NTN3 355 aa15.58■□□□□ 0.08
VIM-203ENST00000469543 YTHDF2Q9Y5A9 579 aaKnown RBP15.58■□□□□ 0.08
VIM-203ENST00000469543 HRNRQ86YZ3 2850 aaPredicted RBP15.57■□□□□ 0.08
VIM-203ENST00000469543 FABP4P15090 132 aa15.57■□□□□ 0.08
VIM-203ENST00000469543 C3orf36Q3SXR2 165 aa15.57■□□□□ 0.08
VIM-203ENST00000469543 GAR1Q9NY12 217 aaKnown RBP15.57■□□□□ 0.08
VIM-203ENST00000469543 ZNF729A6NN14 1252 aaPredicted RBP15.57■□□□□ 0.08
VIM-203ENST00000469543 TEPPQ6URK8 271 aa15.57■□□□□ 0.08
VIM-203ENST00000469543 ASCL5Q7RTU5 278 aa15.57■□□□□ 0.08
VIM-203ENST00000469543 LINC01551Q86U37 167 aa15.57■□□□□ 0.08
VIM-203ENST00000469543 OR10A7Q8NGE5 316 aa15.57■□□□□ 0.08
VIM-203ENST00000469543 FOXA2Q9Y261 457 aaPredicted RBP15.57■□□□□ 0.08
VIM-203ENST00000469543 SCO2A0A1W2PP80 73 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 SAA1P0DJI8 122 aaPredicted RBP15.56■□□□□ 0.08
VIM-203ENST00000469543 TEX36Q5VZQ5 186 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 HIST3H2BBQ8N257 126 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 NUP37Q8NFH4 326 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 FAM216AQ8WUB2 273 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 CTDSP1Q9GZU7 261 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 TEX50A0A1B0GTY4 177 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 PPP1R2P9O14990 202 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 FAM87AP0C7U9 286 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 STAG3L2P0CL84 134 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 STAG3L3P0CL85 134 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 CHRNB4P30926 498 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 SPTBN1Q01082 2364 aaKnown RBP15.56■□□□□ 0.08
VIM-203ENST00000469543 ENY2Q9NPA8 101 aa15.56■□□□□ 0.08
VIM-203ENST00000469543 hADV38S2A0JD32 116 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 KIR2DS2P43631 304 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 TRGV8A0A0C4DH27 118 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 S100PP25815 95 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 C10orf55Q5SWW7 151 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 OR4P4Q8NGL7 312 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 TMEM37Q8WXS4 190 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 RITA1Q96K30 269 aa15.55■□□□□ 0.08
VIM-203ENST00000469543 LYNX1G3V0Z9 82 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 HRASP01112 189 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 LYNX1P0DP58 116 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 TNFRSF1AP19438 455 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 MIR17HGQ75NE6 70 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 SPACA3Q8IXA5 215 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 CTSZQ9UBR2 303 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 A0A0U1RQK1 487 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 ITGB1BP1O14713 200 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 MPDU1O75352 247 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 SNRPCP09234 159 aaKnown RBP15.54■□□□□ 0.08
VIM-203ENST00000469543 TCEAL7Q9BRU2 100 aa15.54■□□□□ 0.08
VIM-203ENST00000469543 UPK2O00526 184 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 S100A2P29034 98 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 FAM78BQ5VT40 261 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.53■□□□□ 0.08
VIM-203ENST00000469543 OR9G1Q8NH87 305 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 CORO2AQ92828 525 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 RAB1CQ92928 201 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 PLEKHA3Q9HB20 300 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 LINC00312Q9Y6C7 94 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 ARHGAP32A7KAX9 2087 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 PPIAL4EA0A075B759 164 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 PPIAL4DF5H284 164 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 TMEM178BH3BS89 294 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 PPIAL4FP0DN26 164 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 OR5B12Q96R08 314 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 SCNM1Q9BWG6 230 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 NCOR1P1Q9H4R4 102 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 LINC00574Q9H8X3 128 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 PPIAL4AQ9Y536 164 aa15.53■□□□□ 0.08
VIM-203ENST00000469543 IGHV3-72A0A0B4J1Y9 119 aa15.52■□□□□ 0.08
VIM-203ENST00000469543 PPP5D1E7EU14 171 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms