RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 F2RP25116 425 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 TGFBR1P36897 503 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 LPAR6P43657 344 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 POU2AF1Q16633 256 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 TM4SF20Q53R12 229 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 SLC38A6Q8IZM9 456 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 TMEM61Q8N0U2 210 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 OR10W1Q8NGF6 305 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 OR1L6Q8NGR2 347 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 MOB3AQ96BX8 217 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 COMMD3Q9UBI1 195 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 OR51B2Q9Y5P1 312 aa13.21□□□□□ -0.29
COL7A1-206ENST00000466591 RYR3Q15413 4870 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 IGLC7A0M8Q6 106 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 TMEM213A2RRL7 107 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 A8MWP6 167 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 GPR31O00270 319 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 PGLYRP1O75594 196 aaPredicted RBP13.2□□□□□ -0.3
COL7A1-206ENST00000466591 TNFAIP8O95379 198 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 HLA-DMAP28067 261 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 GNRHRP30968 328 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 RPS19P39019 145 aaKnown RBP13.2□□□□□ -0.3
COL7A1-206ENST00000466591 PHLDA2Q53GA4 152 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 Q56UQ5 140 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 GDPD1Q8N9F7 314 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 LSM10Q969L4 123 aaKnown RBP13.2□□□□□ -0.3
COL7A1-206ENST00000466591 DGCR14Q96DF8 476 aaKnown RBP13.2□□□□□ -0.3
COL7A1-206ENST00000466591 TMEM56Q96MV1 263 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 C20orf24Q9BUV8 137 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 HIPK2Q9H2X6 1198 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 FKBP11Q9NYL4 201 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 MRPL27Q9P0M9 148 aaKnown RBP13.2□□□□□ -0.3
COL7A1-206ENST00000466591 MLXQ9UH92 298 aa13.2□□□□□ -0.3
COL7A1-206ENST00000466591 LCE6AA0A183 80 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 OR2T8A6NH00 312 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 TGOLN2O43493 480 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 JTBO76095 146 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 PTBP1P26599 531 aaKnown RBP eCLIP13.19□□□□□ -0.3
COL7A1-206ENST00000466591 HRH1P35367 487 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 G6PCP35575 357 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 LAMTOR1Q6IAA8 161 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 LPCAT3Q6P1A2 487 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 ZNF502Q8TBZ5 544 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 VN1R17PQ8TDU5 208 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 GGTLC1Q9BX51 225 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 PRNDQ9UKY0 176 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 DMRT1Q9Y5R6 373 aa13.19□□□□□ -0.3
COL7A1-206ENST00000466591 LOC102724200A0A096LPH7 203 aaPredicted RBP13.18□□□□□ -0.3
COL7A1-206ENST00000466591 IGHV3-21A0A0B4J1V1 117 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 TEX50A0A1B0GTY4 177 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 RBMY1BA6NDE4 496 aaKnown RBP13.18□□□□□ -0.3
COL7A1-206ENST00000466591 RBMY1EA6NEQ0 496 aaKnown RBP13.18□□□□□ -0.3
COL7A1-206ENST00000466591 CGB1A6NKQ9 187 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 SERPINE2P07093 398 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 FGF2P09038 288 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 RBMY1DP0C7P1 496 aaKnown RBP13.18□□□□□ -0.3
COL7A1-206ENST00000466591 DHRS11Q6UWP2 260 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 SNX29P2Q8IUI4 249 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 FCAMRQ8WWV6 532 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 TSC22D3Q99576 134 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 GAR1Q9NY12 217 aaKnown RBP13.18□□□□□ -0.3
COL7A1-206ENST00000466591 NSG2Q9Y328 171 aa13.18□□□□□ -0.3
COL7A1-206ENST00000466591 TRAV25A0A0B4J276 109 aa13.17□□□□□ -0.3
COL7A1-206ENST00000466591 ELLP55199 621 aaPredicted RBP13.17□□□□□ -0.3
COL7A1-206ENST00000466591 UNQ9165/PRO28630Q6UXU0 137 aa13.17□□□□□ -0.3
COL7A1-206ENST00000466591 OR4A16Q8NH70 328 aa13.17□□□□□ -0.3
COL7A1-206ENST00000466591 BSCL2Q96G97 398 aaPredicted RBP13.17□□□□□ -0.3
COL7A1-206ENST00000466591 FXYD6Q9H0Q3 95 aa13.17□□□□□ -0.3
COL7A1-206ENST00000466591 C21orf62Q9NYP8 219 aa13.17□□□□□ -0.3
COL7A1-206ENST00000466591 FAM25AB3EWG3 89 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 FAM25CB3EWG5 89 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 FAM25GB3EWG6 89 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 SPSB3Q6PJ21 355 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 H2BFWTQ7Z2G1 175 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 OR2C3Q8N628 320 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 SLC25A46Q96AG3 418 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 YIPF6Q96EC8 236 aa13.16□□□□□ -0.3
COL7A1-206ENST00000466591 DAZ1Q9NQZ3 744 aaKnown RBP13.16□□□□□ -0.3
COL7A1-206ENST00000466591 F11RQ9Y624 299 aaKnown RBP13.16□□□□□ -0.3
COL7A1-206ENST00000466591 EIF4EP06730 217 aaKnown RBP13.15□□□□□ -0.3
COL7A1-206ENST00000466591 RCVRNP35243 200 aa13.15□□□□□ -0.3
COL7A1-206ENST00000466591 WT1-ASQ06250 92 aa13.15□□□□□ -0.3
COL7A1-206ENST00000466591 MZT2AQ6P582 158 aa13.15□□□□□ -0.3
COL7A1-206ENST00000466591 LINC00322Q6ZN03 302 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-206ENST00000466591 OR5B3Q8NH48 314 aa13.15□□□□□ -0.3
COL7A1-206ENST00000466591 MISP3Q96FF7 219 aa13.15□□□□□ -0.3
COL7A1-206ENST00000466591 SCPEP1Q9HB40 452 aa13.15□□□□□ -0.3
COL7A1-206ENST00000466591 NUPL2O15504 423 aaKnown RBP13.14□□□□□ -0.31
COL7A1-206ENST00000466591 YIF1AO95070 293 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 APOA1P02647 267 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 PGAM2P15259 253 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 APOC4P55056 127 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 KLK9Q2XQG4 91 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 TBC1D26Q86UD7 250 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 TMEM190Q8WZ59 177 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 SPAG8Q99932 426 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-206ENST00000466591 C5orf66Q9H5L9 145 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 NDUFA4L2Q9NRX3 87 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 UBQLN2Q9UHD9 624 aa13.14□□□□□ -0.31
COL7A1-206ENST00000466591 KLK9Q9UKQ9 250 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms