RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TMEM68Q96MH6 324 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 CITED4Q96RK1 184 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 PRR25Q96S07 402 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 PHB2Q99623 299 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 FRAS1Q86XX4 4008 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 TRAV3A0A0B4J244 114 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 MSGN1A6NI15 193 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 CCL24O00175 119 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 LYRM1O43325 122 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 ATG12O94817 140 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 NDUFB6O95139 128 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 RPLP1P05386 114 aaKnown RBP9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 OR9G9P0C7N8 305 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 AKR1C4P17516 323 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 RPL27AP46776 148 aaKnown RBP9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 DHODHQ02127 395 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 ASPHD1Q5U4P2 390 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 C18orf65Q6ZTR6 163 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 H2BFWTQ7Z2G1 175 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 TMED4Q7Z7H5 227 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 SBSPONQ8IVN8 264 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 GLYATL2Q8WU03 294 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 GALNT14Q96FL9 552 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 TSC22D3Q99576 134 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 SPIN2AQ99865 258 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 SPIN2BQ9BPZ2 258 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 TMEM222Q9H0R3 208 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 KCNIP3Q9Y2W7 256 aa9.22□□□□□ -0.93
SQSTM1-206ENST00000466342 UPK1BO75841 260 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 SNAPC5O75971 98 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 CDS2O95674 445 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 IGKV1-5P01602 117 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 MYOD1P15172 320 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 AKR1C2P52895 323 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 SUPT4H1P63272 117 aaKnown RBP9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM128Q5BJH2 165 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 LCNL1Q6ZST4 164 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 CENPSQ8N2Z9 138 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 LHFPL5Q8TAF8 219 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 MYOZ3Q8TDC0 251 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 RAX2Q96IS3 184 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 FYTTD1Q96QD9 318 aaKnown RBP9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 COMMD5Q9GZQ3 224 aa9.21□□□□□ -0.94
SQSTM1-206ENST00000466342 A0A1B0GW64 132 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 CGB1A6NKQ9 187 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 C15orf61A6NNL5 157 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TEX22C9J3V5 150 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 E7EUB6 86 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 H3BUA1 57 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 JTBO76095 146 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 P0C879 139 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 APELAP0DMC3 54 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 ANXA3P12429 323 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 OR2B8PP59922 312 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 UBE2MP61081 183 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM187Q14656 261 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 THOC7Q6I9Y2 204 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM65Q6PI78 240 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 OR5T1Q8NG75 326 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 RBPMSQ93062 196 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM56Q96MV1 263 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 KLK15Q9H2R5 256 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 SLA2Q9H6Q3 261 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM14BQ9NUH8 114 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 FKBP11Q9NYL4 201 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 PRNDQ9UKY0 176 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TBC1D24Q9ULP9 559 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 NSG2Q9Y328 171 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM56-RWDD3S4R434 201 aa9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 PLECQ15149 4684 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-206ENST00000466342 HMX3A6NHT5 357 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 BRI3O95415 125 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 RAB9AP51151 201 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 SRPXP78539 464 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 ASAH1Q13510 395 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 TMEM268Q5VZI3 342 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 SLC25A42Q86VD7 318 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 FAM219AQ8IW50 185 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 SELENOHQ8IZQ5 122 aaKnown RBP9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 TTC9CQ8N5M4 171 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 OR1L8Q8NGR8 309 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 OR5B3Q8NH48 314 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 OR4A16Q8NH70 328 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 RNASE11Q8TAA1 199 aaKnown RBP9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 CASTOR1Q8WTX7 329 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 C4orf3Q8WVX3 66 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 IL22RA2Q969J5 263 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 RRNAD1Q96FB5 475 aaKnown RBP9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 UBE2E2Q96LR5 201 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 SRSF8Q9BRL6 282 aaKnown RBP9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 QTRT1Q9BXR0 403 aaKnown RBP9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 ZMAT4Q9H898 229 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 COA4Q9NYJ1 87 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 PRR13Q9NZ81 148 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 OR51B2Q9Y5P1 312 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 SMAD5-AS1Q9Y6J3 95 aa9.19□□□□□ -0.94
SQSTM1-206ENST00000466342 PIGBOS1A0A0B4J2F0 54 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 TEX50A0A1B0GTY4 177 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 DBX1A6NMT0 343 aa9.18□□□□□ -0.94
SQSTM1-206ENST00000466342 NPIPB5A8MRT5 1133 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms