RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 MEX3AA1L020 520 aaKnown RBP6.46□□□□□ -1.38
USP54-210ENST00000466048 C17orf100A8MU93 164 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 GCSHP23434 173 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 EFNA4P52798 201 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 RPL31P62899 125 aaKnown RBP6.46□□□□□ -1.38
USP54-210ENST00000466048 DMRTC1Q5HYR2 192 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 SP5Q6BEB4 398 aaPredicted RBP6.46□□□□□ -1.38
USP54-210ENST00000466048 SCGB1D4Q6XE38 83 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 MOB3BQ86TA1 216 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 POC1AQ8NBT0 407 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 Q8NFD4 153 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 NUDT10Q8NFP7 164 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 TMEM170AQ8WVE7 144 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 NCKAP5O14513 1909 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 FAM208BQ5VWN6 2430 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 A0A1W2PP11 408 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 IQCF6A8MYZ5 107 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 ITGB1BP1O14713 200 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 AMY1AP04745 511 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 ZNF418Q8TF45 676 aaPredicted RBP6.46□□□□□ -1.38
USP54-210ENST00000466048 THYN1Q9P016 225 aa6.46□□□□□ -1.38
USP54-210ENST00000466048 DEFA4P12838 97 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 UBE2L3P68036 154 aaKnown RBP6.45□□□□□ -1.38
USP54-210ENST00000466048 SRSF4Q08170 494 aaKnown RBP6.45□□□□□ -1.38
USP54-210ENST00000466048 HEPN1Q6WQI6 88 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 SIGMAR1Q99720 223 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 PHF3Q92576 2039 aaKnown RBP6.45□□□□□ -1.38
USP54-210ENST00000466048 FCGR3AP08637 254 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 SRP19P09132 144 aaKnown RBP6.45□□□□□ -1.38
USP54-210ENST00000466048 COX6CP09669 75 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 PPP1CCP36873 323 aaKnown RBP6.45□□□□□ -1.38
USP54-210ENST00000466048 PRSS12P56730 875 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 SRSF9Q13242 221 aaKnown RBP eCLIP6.45□□□□□ -1.38
USP54-210ENST00000466048 Q6ZS49 121 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 OR4F17Q8NGA8 305 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 REG4Q9BYZ8 158 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 OR2D2Q9H210 308 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 PRDM13Q9H4Q3 707 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 TMEM106BQ9NUM4 274 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 ZNF205O95201 554 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 MFAP2P55001 183 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 UCP3P55916 312 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 C1orf194Q5T5A4 169 aa6.45□□□□□ -1.38
USP54-210ENST00000466048 TRBV24-1A0A075B6N3 115 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 LOC105371242A0A075B767 164 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 RNF222A6NCQ9 220 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 CRYM-AS1A6NIL9 109 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 TNFSF13O75888 250 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 SMIM13P0DJ93 91 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 ARF6P62330 175 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 GUSBP1Q15486 140 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 PRR30Q53SZ7 412 aaPredicted RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 LHFPL1Q86WI0 220 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST3H2BBQ8N257 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 RTTNQ86VV8 2226 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 SZT2Q5T011 3432 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 IGKV1-27A0A075B6S5 117 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 A0A1W2PRD5 423 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 A0A1W2PRF3 423 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 A0A1W2PRM7 423 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 THBDP07204 575 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 FAM157CP0CG43 387 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 RPL7P18124 248 aaKnown RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 ZNF816Q0VGE8 651 aaPredicted RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 PDPNQ86YL7 162 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 ZNF714Q96N38 554 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 RARRES2Q99969 163 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 OR2W1Q9Y3N9 320 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 SLC25A15Q9Y619 301 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 TRAV39A0A0B4J263 110 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 WIPF3A6NGB9 483 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BKO60814 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BJP06899 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 MDKP21741 143 aaPredicted RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BOP23527 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BBP33778 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 COMPP49747 757 aaPredicted RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BDP58876 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BCP62807 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST2H2BEQ16778 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 ORAOV1Q8WV07 137 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BHQ93079 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 C5orf30Q96GV9 206 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 IMMP2LQ96T52 175 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BNQ99877 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 HIST1H2BMQ99879 126 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 ACACBO00763 2458 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 ABCA4P78363 2273 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 ZNF318Q5VUA4 2279 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 FBLL1A6NHQ2 334 aaKnown RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 H0Y980 276 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 WT1P19544 449 aaPredicted RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 MC5RP33032 325 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 C14orf144Q96I85 54 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 QTRT1Q9BXR0 403 aaKnown RBP6.44□□□□□ -1.38
USP54-210ENST00000466048 TMEM222Q9H0R3 208 aa6.44□□□□□ -1.38
USP54-210ENST00000466048 A0A1B0GW64 132 aa6.43□□□□□ -1.38
USP54-210ENST00000466048 IGHV3-13P01766 116 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms