RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ANOS1P23352 680 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 ZNF324BQ6AW86 544 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 PRDM13Q9H4Q3 707 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 TMEM106BQ9NUM4 274 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 FCGR2BP31994 310 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 CSRP2Q16527 193 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 LYZL4Q96KX0 146 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 IGLV3-12A0A075B6K2 115 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 PEX7O00628 323 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 REG1AP05451 166 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 SMIM13P0DJ93 91 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 OR10J6PQ8NGY7 276 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 METTL26Q96S19 204 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 CEACAM1P13688 526 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 HIST1H2BLQ99880 126 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 HILPDAQ9Y5L2 63 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 CGB1A6NKQ9 187 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 TM4SF5O14894 197 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 ZNF883P0CG24 379 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 LINC00305Q7Z4B0 112 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 ST6GALNAC6Q969X2 333 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 FMC1Q96HJ9 113 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 C7orf71A4D174 169 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 CCL20P78556 96 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 Q6ZT83 130 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 ZNF256Q9Y2P7 627 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 Q6AWC8 147 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 DOCK4Q8N1I0 1966 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 TIAF1O95411 115 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 PPP1R32Q7Z5V6 425 aa16.03■□□□□ 0.16
CCDC88B-204ENST00000463837 NUDT3O95989 172 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 GFRA1P56159 465 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 ANK1P16157 1881 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 SERF1AO75920 110 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 ZNF703Q9H7S9 590 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 LAMTOR2Q9Y2Q5 125 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 A0A1W2PS18 150 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 IGFBP2P18065 325 aa16.02■□□□□ 0.16
CCDC88B-204ENST00000463837 TRIOBPQ9H2D6 2365 aa16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 ZNF324O75467 553 aaPredicted RBP16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 LYL1P12980 280 aa16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 GOLT1AQ6ZVE7 132 aa16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 ZNF414Q96IQ9 312 aa16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 FAM90A9PA6NNJ1 464 aa16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 RPL39P5Q59GN2 51 aa16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 RPP21Q9H633 154 aaKnown RBP16.02■□□□□ 0.15
CCDC88B-204ENST00000463837 IGKV1D-13A0A0B4J2D9 117 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 FAM106CPP0CH98 169 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 IGKV1-13P0DP09 117 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 SUPT4H1P63272 117 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 CDCP2Q5VXM1 449 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 DNM1P46Q6ZS02 220 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 FAM19A2Q8N3H0 131 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 NRN1Q9NPD7 142 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 OSTCQ9NRP0 149 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 SNAI2O43623 268 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 KLRB1Q12918 225 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 MBNL2Q5VZF2 373 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 NIT1Q86X76 327 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 SYT8Q8NBV8 401 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 C1orf162Q8NEQ5 155 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 RNF115Q9Y4L5 304 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 NBEAP1P0C6P0 100 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 RNASEH2CQ8TDP1 164 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 GREB1Q4ZG55 1949 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 GDF9O60383 454 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 OR10J3Q5JRS4 329 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 CLDN16Q9Y5I7 305 aa16.01■□□□□ 0.15
CCDC88B-204ENST00000463837 ADMP35318 185 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 TNFSF10P50591 281 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 MYOFQ9NZM1 2061 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 C16orf92Q96LL3 132 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 C1QTNF9BB2RNN3 333 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 WNT9BO14905 357 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 CRIPAKQ8N1N5 446 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 TMEM144Q7Z5S9 345 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 GNB1LQ9BYB4 327 aa16■□□□□ 0.15
CCDC88B-204ENST00000463837 PRR19A6NJB7 356 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 CX3CL1P78423 397 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 TIMP4Q99727 224 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 KLK15Q9H2R5 256 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 CFPP27918 469 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 TCF23Q7RTU1 214 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 A0A1B0GUT8 65 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 IQCF6A8MYZ5 107 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 MOSP00540 346 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 RFPL3SP0C7P2 107 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 WBP1Q96G27 269 aa15.99■□□□□ 0.15
CCDC88B-204ENST00000463837 RBFOX2O43251 390 aaKnown RBP eCLIP15.98■□□□□ 0.156e-7■■■■■ 49.7
CCDC88B-204ENST00000463837 PEAR1Q5VY43 1037 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 OR13A1Q8NGR1 328 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 E9PQ18 207 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 ZNF497Q6ZNH5 498 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 NEUROG1Q92886 237 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 IMMP1LQ96LU5 166 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 PIMREGQ9BSJ6 248 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 IGKV1D-8A0A087WSZ0 117 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 EFEMP2O95967 443 aa15.98■□□□□ 0.15
CCDC88B-204ENST00000463837 CXCL1P09341 107 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 GLRXP35754 106 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms