RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 SFTPCP11686 197 aa5.92□□□□□ -1.46
SYNE1-216ENST00000461872 C1QTNF9P0C862 333 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 TBR1Q16650 682 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 OR8I2Q8N0Y5 310 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF714Q96N38 554 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 MS4A5Q9H3V2 200 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 ELOVL5Q9NYP7 299 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 A0A087WV48 116 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 DLEU1O43261 78 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 EDN3P14138 238 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 TPPP3Q9BW30 176 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 CNIH1O95406 144 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IL6RP08887 468 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 SRIP30626 198 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 OR1N2Q8NGR9 330 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 KLF14Q8TD94 323 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 TSKUQ8WUA8 353 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 RPH3ALQ9UNE2 315 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 LINC00312Q9Y6C7 94 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 C22orf46C9J442 243 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 DUTP33316 252 aaKnown RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 SSMEM1Q8WWF3 244 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF835Q9Y2P0 537 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1-27A0A075B6S5 117 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1-12A0A0C4DH73 117 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 A0A1W2PQM1 296 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 SLC25A17O43808 307 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 SS18L1O75177 396 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1D-12P01611 117 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 RPL7P18124 248 aaKnown RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 CFHR2P36980 270 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 NHLH1Q02575 133 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 MBNL2Q5VZF2 373 aaKnown RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 MIC13Q5XKP0 118 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 RTN4RQ9BZR6 473 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IFI27L2Q9H2X8 130 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IL36RNQ9UBH0 155 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 ANKHD1Q8IWZ3 2542 aaKnown RBP5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1D-13A0A0B4J2D9 117 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 KBTBD11-OT1A0A1B0GTJ5 212 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 OR2T8A6NH00 312 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 SHISA7A6NL88 538 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1-13P0DP09 117 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 HNF1AP20823 631 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 LYPD1Q8N2G4 141 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 EFNA2O43921 213 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 LHX2P50458 406 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 GGNQ86UU5 652 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF355PQ9NSJ1 428 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 EML5Q05BV3 1969 aa5.91□□□□□ -1.46
SYNE1-216ENST00000461872 RABAC1Q9UI14 185 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 ZFP36L1Q07352 338 aaKnown RBP5.9□□□□□ -1.46
SYNE1-216ENST00000461872 TIMM23BQ5SRD1 257 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 NRN1Q9NPD7 142 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 DOCK10Q96BY6 2186 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 K7ESF4 209 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 NTN3O00634 580 aaPredicted RBP5.9□□□□□ -1.46
SYNE1-216ENST00000461872 MAGEA5P43359 124 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 AESQ08117 197 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 SPRED2Q7Z698 418 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 IDI2-AS1Q9NZ38 188 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 IL17BQ9UHF5 180 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 SRRM5B3KS81 715 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 SPATA46Q5T0L3 261 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 OR9G1Q8NH87 305 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 SNRNP40Q96DI7 357 aaKnown RBP5.9□□□□□ -1.46
SYNE1-216ENST00000461872 MED19A0JLT2 244 aaPredicted RBP5.9□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1-5P01602 117 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 CTSBP07858 339 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 TEX43Q6ZNM6 134 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 NEUROG1Q92886 237 aa5.9□□□□□ -1.46
SYNE1-216ENST00000461872 ATG2AQ2TAZ0 1938 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 TREML4Q6UXN2 200 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 EXPH5Q8NEV8 1989 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 SERF1AO75920 110 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 PPOXP50336 477 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 HIST1H1AQ02539 215 aaPredicted RBP5.9□□□□□ -1.47
SYNE1-216ENST00000461872 TNRC6AQ8NDV7 1962 aaKnown RBP5.9□□□□□ -1.47
SYNE1-216ENST00000461872 FAM87AP0C7U9 286 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 PATE4P0C8F1 98 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 FCER1GP30273 86 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 RPL11P62913 178 aaKnown RBP5.9□□□□□ -1.47
SYNE1-216ENST00000461872 NCKAP5O14513 1909 aa5.9□□□□□ -1.47
SYNE1-216ENST00000461872 IFITM10A6NMD0 228 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 PEX7O00628 323 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 KLF7O75840 302 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-216ENST00000461872 RTN4RL2Q86UN3 420 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 A0A1B0GUT8 65 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 CBLN1P23435 193 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 KHDC1LQ5JSQ8 128 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 STPG1Q5TH74 334 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 VWA1Q6PCB0 445 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 RPP21Q9H633 154 aaKnown RBP5.89□□□□□ -1.47
SYNE1-216ENST00000461872 NCBP2LA6PVI3 153 aaKnown RBP5.89□□□□□ -1.47
SYNE1-216ENST00000461872 HERVK_113P61574 105 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 POU2AF1Q16633 256 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 COPS9Q8WXC6 57 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 TDGF1P3P51864 188 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 LGALS4P56470 323 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 SIGLEC14Q08ET2 396 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms