RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 H3BTX0 84 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 ATP5G3P48201 142 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 OR4B1Q8NGF8 309 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 GUCD1Q96NT3 240 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 MOSP00540 346 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 CD5P06127 495 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 CEACAM1P13688 526 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 UNQ5815/PRO19632Q6UWF5 114 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 PGLYRP4Q96LB8 373 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 NAPSAO96009 420 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 CBLN1P23435 193 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 CCL20P78556 96 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 SRSF4Q08170 494 aaKnown RBP12.37□□□□□ -0.43
PTPRU-205ENST00000460170 SLC25A33Q9BSK2 321 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 LINC00312Q9Y6C7 94 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 MORN2Q502X0 79 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 SPANXN1Q5VSR9 72 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 LINC00305Q7Z4B0 112 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 HEATR5AQ86XA9 2040 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 LOC105371242A0A075B767 164 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 CD55P08174 381 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 BSPH1Q075Z2 132 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 WFIKKN1Q96NZ8 548 aa12.37□□□□□ -0.43
PTPRU-205ENST00000460170 IFITM10A6NMD0 228 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 LINC01560Q8TB33 94 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 RABAC1Q9UI14 185 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 C17orf100A8MU93 164 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 GPX4P36969 197 aaPredicted RBP12.36□□□□□ -0.43
PTPRU-205ENST00000460170 TMEM78Q5T7P6 136 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 SSBP3Q9BWW4 388 aaPredicted RBP12.36□□□□□ -0.43
PTPRU-205ENST00000460170 LOC389332A0A1B0GUA5 103 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 SCO2A0A1W2PP80 73 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 TFF1P04155 84 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 PMCHL1Q16048 86 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 ZCCHC14Q8WYQ9 949 aaKnown RBP12.36□□□□□ -0.43
PTPRU-205ENST00000460170 B3GALT5-AS1P59052 145 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 RELBQ01201 579 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 TWIST1Q15672 202 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 FOXL2NBQ6ZUU3 175 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 CACNG8Q8WXS5 425 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 ABHD17AQ96GS6 310 aa12.36□□□□□ -0.43
PTPRU-205ENST00000460170 MRPL20Q9BYC9 149 aaKnown RBP12.36□□□□□ -0.43
PTPRU-205ENST00000460170 RBFOX2O43251 390 aaKnown RBP eCLIP12.35□□□□□ -0.435e-7■■■■■ 40.8
PTPRU-205ENST00000460170 KIR2DL2P43627 348 aaPredicted RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 NOTCH4Q99466 2003 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 RPL7P18124 248 aaKnown RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 MAS1LP35410 378 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 RPL23P62829 140 aaKnown RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 Q1RN00 199 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 COL5A1-AS1Q5SY13 56 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 SRSF12Q8WXF0 261 aaKnown RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 TMEM208Q9BTX3 173 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 MRPL37Q9BZE1 423 aaKnown RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 SAA2-SAA4A0A096LPE2 208 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 SAA2P0DJI9 122 aaPredicted RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 LOXL3P58215 753 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 NPIPB11E5RHQ5 1161 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 LEPROTL1O95214 131 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 TRBV23-1A0A0A0MS06 115 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 IGHV1-18A0A0C4DH31 117 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 EAF1Q96JC9 268 aaPredicted RBP12.35□□□□□ -0.43
PTPRU-205ENST00000460170 IL36BQ9NZH7 164 aa12.35□□□□□ -0.43
PTPRU-205ENST00000460170 POLEQ07864 2286 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 NBEAP1P0C6P0 100 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 HOXA5P20719 270 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 TMEM144Q7Z5S9 345 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 METTL26Q96S19 204 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 SLC17A3O00476 420 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 IL18BPO95998 194 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 DUTP33316 252 aaKnown RBP12.34□□□□□ -0.43
PTPRU-205ENST00000460170 SPATA45Q537H7 98 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 GOLT1AQ6ZVE7 132 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 MYOZ3Q8TDC0 251 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 PLXNA2O75051 1894 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 ETV2O00321 342 aaPredicted RBP12.34□□□□□ -0.43
PTPRU-205ENST00000460170 CLEC2AQ6UVW9 174 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 NMSQ5H8A3 153 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 MBD3L1Q8WWY6 194 aa12.34□□□□□ -0.43
PTPRU-205ENST00000460170 C15orf61A6NNL5 157 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 MGPP08493 103 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 SCGB1C2P0DMR2 95 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 CKS2P33552 79 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 UPK2O00526 184 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 IL4P05112 153 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 MIR17HGQ75NE6 70 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 FBXL15Q9H469 300 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 CCL3L1P16619 93 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 PSG9Q00887 426 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 ZFP30Q9Y2G7 519 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 SH2D7A6NKC9 451 aaPredicted RBP12.33□□□□□ -0.44
PTPRU-205ENST00000460170 GATA2P23769 480 aaPredicted RBP12.33□□□□□ -0.44
PTPRU-205ENST00000460170 RBPMS2Q6ZRY4 209 aaKnown RBP12.33□□□□□ -0.44
PTPRU-205ENST00000460170 WFDC3Q8IUB2 231 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 C16orf92Q96LL3 132 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 ELOVL1Q9BW60 279 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 DPM3Q9P2X0 92 aa12.33□□□□□ -0.44
PTPRU-205ENST00000460170 SAA1P0DJI8 122 aaPredicted RBP12.32□□□□□ -0.44
PTPRU-205ENST00000460170 RNASEH2CQ8TDP1 164 aaKnown RBP12.32□□□□□ -0.44
PTPRU-205ENST00000460170 ZNF524Q96C55 264 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms