RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 EIF3GO75821 320 aaKnown RBP eCLIP6.14□□□□□ -1.43
SYNE1-213ENST00000448038 IGLV1-44P01699 117 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF137PP52743 207 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 AWAT1Q58HT5 328 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 C5orf24Q7Z6I8 188 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 FAM24BQ8N5W8 94 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 COQ2Q96H96 371 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 SEC11CQ9BY50 192 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 IFI27L2Q9H2X8 130 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 S4R3C0 116 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 RBFOX2O43251 390 aaKnown RBP eCLIP6.14□□□□□ -1.43
SYNE1-213ENST00000448038 FAM74A3Q4VXF1 159 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 LYPD2Q6UXB3 125 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 LHFPL1Q86WI0 220 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 LDLRAD3Q86YD5 345 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 STPG2Q8N412 459 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 NAT8BQ9UHF3 227 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 TRAPPC1Q9Y5R8 145 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 DENND4AQ7Z401 1863 aa6.14□□□□□ -1.43
SYNE1-213ENST00000448038 P01737 135 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 ORM1P02763 201 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 OR51G1Q8NGK1 321 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 C16orf92Q96LL3 132 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 NABP2Q9BQ15 211 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 C8orf88P0DMB2 117 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 Q6ZR03 302 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 RBPMS2Q6ZRY4 209 aaKnown RBP6.13□□□□□ -1.43
SYNE1-213ENST00000448038 STPG3Q8N7X2 389 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 HS3ST6Q96QI5 342 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 FAM103A1Q9BTL3 118 aaKnown RBP6.13□□□□□ -1.43
SYNE1-213ENST00000448038 AURKAIP1Q9NWT8 199 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-213ENST00000448038 FBXL7Q9UJT9 491 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 PIEZO1Q92508 2521 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 A6NNC1 897 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 IGHV3-23P01764 117 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 HTN1P15515 57 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF525Q8N782 197 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 CLRN3Q8NCR9 226 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 SLC25A33Q9BSK2 321 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 BPESC1Q9GZL8 116 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 MED13LQ71F56 2210 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 DOCK10Q96BY6 2186 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 H3BQ15 152 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 IL4P05112 153 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 TCL1AP56279 114 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 RELQ04864 619 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-213ENST00000448038 VMO1Q7Z5L0 202 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 PRNTQ86SH4 94 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 TRBV6-6A0A0A6YYG2 114 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 CAMPP49913 170 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 KLRD1Q13241 179 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 GUCA2BQ16661 112 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF418Q8TF45 676 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-213ENST00000448038 TMEM37Q8WXS4 190 aa6.13□□□□□ -1.43
SYNE1-213ENST00000448038 PGPA6NDG6 321 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 C15orf61A6NNL5 157 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 F5H697 171 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 ARL14EPLP0DKL9 152 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 FAM162BQ5T6X4 162 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 CYB561D1Q8N8Q1 229 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 B4DSR2 109 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 NPPCP23582 126 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 UQCRFS1P47985 274 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 LRRC75BQ2VPJ9 315 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 CYP2G1PQ6ZSU1 146 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 SRSF12Q8WXF0 261 aaKnown RBP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 ANAPC16Q96DE5 110 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 WNT10AQ9GZT5 417 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 SMDT1Q9H4I9 107 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 ELOA3CA0A087WX78 387 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 MEF2BQ02080 365 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 FAM210BQ96KR6 192 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 GGACTQ9BVM4 153 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 C19orf24Q9BVV8 132 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 TRAV14DV4A0A0A6YYC5 116 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 NDUFB4O95168 129 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 DANCRP0C864 163 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 RPL7P18124 248 aaKnown RBP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 LY6G6FQ5SQ64 297 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 TEX45Q8NA69 505 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 C5orf17Q8NAS9 161 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 GATAD1Q8WUU5 269 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 PSMG3Q9BT73 122 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 OR51M1Q9H341 326 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 C21orf62Q9NYP8 219 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 C7orf77A4D0Y5 90 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 B4DEV8 164 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 FCN1O00602 326 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 MAS1LP35410 378 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 FHITP49789 147 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 TM4SF20Q53R12 229 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 ZNF738Q8NE65 137 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 NPCDR1Q9BY65 106 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 DKK4Q9UBT3 224 aa6.12□□□□□ -1.43
SYNE1-213ENST00000448038 FOXA2Q9Y261 457 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-213ENST00000448038 A0A0G2JLM5 398 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 IL6RP08887 468 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-213ENST00000448038 OR9G9P0C7N8 305 aa6.11□□□□□ -1.43
SYNE1-213ENST00000448038 IGFBP2P18065 325 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms