RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 OR4F5Q8NH21 305 aa11.68□□□□□ -0.54
LIMD1-202ENST00000440097 PINX1Q96BK5 328 aaKnown RBP11.68□□□□□ -0.54
LIMD1-202ENST00000440097 OR4F4Q96R69 305 aa11.68□□□□□ -0.54
LIMD1-202ENST00000440097 UBE2L5PA0A1B0GUS4 154 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 LINC00473A8K010 186 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 ZNF705FA8MVS1 300 aaPredicted RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 M0R1X1 148 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 ZNF705DP0CH99 300 aaPredicted RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 ZNF705BP0CI00 300 aaPredicted RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 PSMB3P49720 205 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 SPANXN5Q5MJ07 72 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 TMEM256Q8N2U0 113 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 ANAPC16Q96DE5 110 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 DIRC2Q96SL1 478 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 HSD17B10Q99714 261 aaKnown RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 YLPM1P49750 1951 aaKnown RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 TMEM250H0YL14 139 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 TYMSP04818 313 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 RPLP1P05386 114 aaKnown RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 WNT2P09544 360 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 CA7P43166 264 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 HBG1P69891 147 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 HBG2P69892 147 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 MSMO1Q15800 293 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 RPL39P5Q59GN2 51 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 H2BFWTQ7Z2G1 175 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 GAFA1Q96PS6 74 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 SLC25A22Q9H936 323 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 NKX6-3A6NJ46 265 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 NUPR1O60356 82 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 FCGR3BO75015 233 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 CD3EP07766 207 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 GRNP28799 593 aaKnown RBP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 OR10J1P30954 320 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 TAF15Q92804 592 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIMD1-202ENST00000440097 SDSLQ96GA7 329 aa11.67□□□□□ -0.54
LIMD1-202ENST00000440097 CRYBG3Q68DQ2 2970 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 CHRNA7P36544 502 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 SRP14P37108 136 aaKnown RBP11.66□□□□□ -0.54
LIMD1-202ENST00000440097 Q8TCH9 128 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 FAM222BQ8WU58 562 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 MS4A10Q96PG2 267 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 TBX15Q96SF7 602 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 RAB9BQ9NP90 201 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 DOCK11Q5JSL3 2073 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 E7EQL1 145 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 IL3RAP26951 378 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 CHRNB4P30926 498 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 GNG10P50151 68 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 FAM78BQ5VT40 261 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 RNASE6Q93091 150 aaKnown RBP11.66□□□□□ -0.54
LIMD1-202ENST00000440097 CBY1Q9Y3M2 126 aa11.66□□□□□ -0.54
LIMD1-202ENST00000440097 TACC2O95359 2948 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 TRAV38-1A0A0B4J264 116 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 KBTBD11-OT1A0A1B0GTJ5 212 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 SHISA9B4DS77 424 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 YPEL1O60688 119 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 HPRT1P00492 218 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 ZNF134P52741 427 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 LOXL3P58215 753 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 ACSM6Q6P461 480 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 ZNF788Q6ZQV5 615 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 YPEL2Q96QA6 119 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 CLN8Q9UBY8 286 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 DCHS2Q6V1P9 2916 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 M0QZK8 103 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 SPINK9Q5DT21 86 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 UTF1Q5T230 341 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 CST9LP1Q5W188 147 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 OR8G2PQ6IF36 304 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 KCNIP4Q6PIL6 250 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 ST6GALNAC3Q8NDV1 305 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 ZCCHC14Q8WYQ9 949 aaKnown RBP11.65□□□□□ -0.54
LIMD1-202ENST00000440097 SLC25A10Q9UBX3 287 aaPredicted RBP11.65□□□□□ -0.54
LIMD1-202ENST00000440097 TRAPPC1Q9Y5R8 145 aa11.65□□□□□ -0.54
LIMD1-202ENST00000440097 RAI1Q7Z5J4 1906 aaPredicted RBP11.65□□□□□ -0.55
LIMD1-202ENST00000440097 PPIAL4EA0A075B759 164 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 PPIAL4DF5H284 164 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 F2RL2O00254 374 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 PPIAL4FP0DN26 164 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 CD33P20138 364 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 BRWD1-AS2P59051 145 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 RPL15P61313 204 aaKnown RBP11.64□□□□□ -0.55
LIMD1-202ENST00000440097 SLC38A11Q08AI6 406 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 C17orf58Q2M2W7 97 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 H1FXQ92522 213 aaKnown RBP11.64□□□□□ -0.55
LIMD1-202ENST00000440097 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.64□□□□□ -0.55
LIMD1-202ENST00000440097 PPIAL4AQ9Y536 164 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 HIVEP3Q5T1R4 2406 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 A0A0U1RQK1 487 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 ZNF320A2RRD8 509 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 PLAUP00749 431 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 DUTP33316 252 aaKnown RBP11.64□□□□□ -0.55
LIMD1-202ENST00000440097 EIF4EBP1Q13541 118 aaPredicted RBP11.64□□□□□ -0.55
LIMD1-202ENST00000440097 LYG1Q8N1E2 194 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 MS4A5Q9H3V2 200 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 AURKAIP1Q9NWT8 199 aaPredicted RBP11.64□□□□□ -0.55
LIMD1-202ENST00000440097 FAM208BQ5VWN6 2430 aa11.64□□□□□ -0.55
LIMD1-202ENST00000440097 GAGE1Q13065 139 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms