RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC25A39Q9BZJ4 359 aaPredicted RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 CRPP02741 224 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 RND2P52198 227 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 ZNF441Q8N8Z8 693 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 ZNF48Q96MX3 618 aaPredicted RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 TMUB1Q9BVT8 246 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 C12orf49Q9H741 205 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 UCNP55089 124 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 NRTNQ99748 197 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 RRHO14718 337 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 PRSS8Q16651 343 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 RRN3P1Q2M238 152 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 PHLDA1Q8WV24 401 aaPredicted RBP6.15□□□□□ -1.42
VPS53-204ENST00000437048 PPDPFLQ8WWR9 84 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 TCF19Q9Y242 345 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 IGHV3-64DA0A0J9YX35 117 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 METTL12A8MUP2 240 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 M0R1B8 84 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 ZP1P60852 638 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 KLF17Q5JT82 389 aaPredicted RBP6.15□□□□□ -1.42
VPS53-204ENST00000437048 FGF11Q92914 225 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 TMEM126AQ9H061 195 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 GAGE12BA1L429 117 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 CD3EP07766 207 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 LIFP15018 202 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 CTGFP29279 349 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 Q0VG73 95 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 MS4A4AQ96JQ5 239 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 MALRD1Q5VYJ5 2156 aa6.15□□□□□ -1.42
VPS53-204ENST00000437048 HOXB3P14651 431 aaPredicted RBP6.15□□□□□ -1.42
VPS53-204ENST00000437048 PHF7Q9BWX1 381 aaPredicted RBP6.15□□□□□ -1.42
VPS53-204ENST00000437048 Q6ZS49 121 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 SPXQ9BT56 116 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 MEIG1Q5JSS6 88 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 UPK3AO75631 287 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 DTX2Q86UW9 622 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 FAM157BP0CG42 384 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 GNB2P62879 340 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 ACTL10Q5JWF8 245 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 VN1R4Q7Z5H5 301 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 LINC00470Q9BZP3 86 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 SLC25A15Q9Y619 301 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 SCN10AQ9Y5Y9 1956 aa6.15□□□□□ -1.43
VPS53-204ENST00000437048 MGPP08493 103 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 CBLN1P23435 193 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 ZNF683Q8IZ20 524 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 OR11H4Q8NGC9 324 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 LOXL2Q9Y4K0 774 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.14□□□□□ -1.43
VPS53-204ENST00000437048 PGLYRP1O75594 196 aaPredicted RBP6.14□□□□□ -1.43
VPS53-204ENST00000437048 KRTCAP3Q53RY4 240 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 SRSF12Q8WXF0 261 aaKnown RBP6.14□□□□□ -1.43
VPS53-204ENST00000437048 ZNF488Q96MN9 340 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 RNF115Q9Y4L5 304 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 NBEAP1P0C6P0 100 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 CX3CL1P78423 397 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 OR5P3Q8WZ94 311 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 ERG28Q9UKR5 140 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 COLCA2A8K830 154 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 ZNF750Q32MQ0 723 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 EEF1AKMT3Q96AZ1 226 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 ONECUT1Q9UBC0 465 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 HCFC1R1Q9NWW0 138 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 A0A096LPE4 126 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 A0A1W2PPZ6 126 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 NDUFC2O95298 119 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 PAX2Q02962 417 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 MRPS18CQ9Y3D5 142 aaKnown RBP6.14□□□□□ -1.43
VPS53-204ENST00000437048 COL10A1Q03692 680 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 LINC00696Q6ZRV3 163 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 NRSN2Q9GZP1 204 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 GPX1P07203 203 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 KLK2P20151 261 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 SLC25A47Q6Q0C1 308 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 RNF5Q99942 180 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 MED12LQ86YW9 2145 aa6.14□□□□□ -1.43
VPS53-204ENST00000437048 IGHV1-24A0A0C4DH33 117 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 AHRRA9YTQ3 701 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 CRYBB3P26998 211 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 TIMP3P35625 211 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 MLNRO43193 412 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 KLF4O43474 513 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 LYL1P12980 280 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 LOC285556D6RIA3 1793 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 PGPA6NDG6 321 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 CRISPLD2Q9H0B8 497 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 NYNRINQ9P2P1 1898 aaKnown RBP6.13□□□□□ -1.43
VPS53-204ENST00000437048 NANOS3P60323 173 aaKnown RBP6.13□□□□□ -1.43
VPS53-204ENST00000437048 PKIGQ9Y2B9 76 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 SYNGR3O43761 229 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 TNFRSF18Q9Y5U5 241 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 IGLV1-36A0A0B4J1U3 117 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 SERF1AO75920 110 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 MEGF9Q9H1U4 602 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 CCDC168Q8NDH2 2452 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 A8MWP6 167 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 RPL23P62829 140 aaKnown RBP6.13□□□□□ -1.43
VPS53-204ENST00000437048 RASL10BQ96S79 203 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 KLHDC2Q9Y2U9 406 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 NHSL1Q5SYE7 1610 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms