RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ABCA7Q8IZY2 2146 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 TDRD6O60522 2096 aaKnown RBP3.93□□□□□ -1.78
VPS13A-207ENST00000419472 SCN3AQ9NY46 2000 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 TRBV24-1A0A075B6N3 115 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 C12orf77C9JDV5 145 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 XKRYO14609 159 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 SLC16A7O60669 478 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 PPICP45877 212 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 OR1E2P47887 323 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 HIST1H3AP68431 136 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF763Q0D2J5 394 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 EBPQ15125 230 aaKnown RBP3.93□□□□□ -1.78
VPS13A-207ENST00000419472 TMEM30BQ3MIR4 351 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 FAM27D1Q5T7N8 215 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 COX18Q8N8Q8 333 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 Q8NBF4 154 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 OR4C16Q8NGL9 310 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 OR9G1Q8NH87 305 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 MS4A6EQ96DS6 147 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 PRAP1Q96NZ9 151 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 EIF5A2Q9GZV4 153 aaKnown RBP3.93□□□□□ -1.78
VPS13A-207ENST00000419472 PLEKHJ1Q9NW61 149 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 TAS2R8Q9NYW2 309 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 PLXNB3Q9ULL4 1909 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 SCN2AQ99250 2005 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 ASXL3Q9C0F0 2248 aa3.93□□□□□ -1.78
VPS13A-207ENST00000419472 NOTCH2Q04721 2471 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 IGHV1OR15-9A0A0B4J2B8 117 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 B4DEV8 164 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 C10orf142B7Z368 130 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 H3BQ15 152 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 J3QRE1 110 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TAAR5O14804 337 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF354AO60765 605 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 UTS2O95399 124 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF883P0CG24 379 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 AK4P27144 223 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 CD34P28906 385 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 NANOS2P60321 138 aaKnown RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 RPL32P62910 135 aaKnown RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 FOXF1Q12946 379 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TMEM183BQ1AE95 376 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 NOXRED1Q6NXP6 359 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 WDR82Q6UXN9 313 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 COX15Q7KZN9 410 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TMED4Q7Z7H5 227 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF101Q8IZC7 436 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 DEFB119Q8N690 84 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 CCL4L1Q8NHW4 92 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TMEM190Q8WZ59 177 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 DCUN1D4Q92564 292 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 MAL2Q969L2 176 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 AQP10Q96PS8 301 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SLC25A21Q9BQT8 299 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 POLR2J3Q9H1A7 115 aaKnown RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TAF9BQ9HBM6 251 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TAC3Q9UHF0 121 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 C14orf166Q9Y224 244 aaKnown RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SIGLEC7Q9Y286 467 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 LAMTOR2Q9Y2Q5 125 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 CSAG2Q9Y5P2 127 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 CFAP46Q8IYW2 2715 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 PCDH15Q96QU1 1955 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 EP300Q09472 2414 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 CEP192Q8TEP8 1941 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 IGHV3OR16-13A0A075B7E8 117 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 TLCD2A6NGC4 264 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 FAAHO00519 579 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 FFAR1O14842 300 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 CRLF1O75462 422 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 MPZL1O95297 269 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 FSHBP01225 129 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 LOXP28300 417 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SLC25A1P53007 311 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 OR12D2P58182 307 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 PLPPR5Q32ZL2 321 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF791Q3KP31 576 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF585BQ52M93 769 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SUMF2Q8NBJ7 301 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SLC26A10Q8NG04 563 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 OR5AK3PQ8NH89 298 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SEH1LQ96EE3 360 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 NICN1Q9BSH3 213 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 MTFP1Q9UDX5 166 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 FUT9Q9Y231 359 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 SNRNP200O75643 2136 aaKnown RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 COL5A1P20908 1838 aaPredicted RBP3.92□□□□□ -1.78
VPS13A-207ENST00000419472 HEATR5BQ9P2D3 2071 aa3.92□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF705FA8MVS1 300 aaPredicted RBP3.91□□□□□ -1.78
VPS13A-207ENST00000419472 TRAPPC2LH3BP13 241 aa3.91□□□□□ -1.78
VPS13A-207ENST00000419472 GNG7O60262 68 aa3.91□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF705DP0CH99 300 aaPredicted RBP3.91□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF705BP0CI00 300 aaPredicted RBP3.91□□□□□ -1.78
VPS13A-207ENST00000419472 MPC1LP0DKB6 136 aa3.91□□□□□ -1.78
VPS13A-207ENST00000419472 ZNF19P17023 458 aa3.91□□□□□ -1.78
VPS13A-207ENST00000419472 CSRP1P21291 193 aaKnown RBP3.91□□□□□ -1.78
VPS13A-207ENST00000419472 PPIBP23284 216 aaKnown RBP3.91□□□□□ -1.78
VPS13A-207ENST00000419472 CXCR1P25024 350 aa3.91□□□□□ -1.78
VPS13A-207ENST00000419472 GDF1P27539 372 aa3.91□□□□□ -1.78
VPS13A-207ENST00000419472 RAB38P57729 211 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms