RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MRPL32Q9BYC8 188 aaKnown RBP6.82□□□□□ -1.32
USP54-203ENST00000418501 VAX2Q9UIW0 290 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 M0QZK8 103 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 FAM157CP0CG43 387 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 PSG5Q15238 335 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 LCN15Q6UWW0 184 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 SLC16A13Q7RTY0 426 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 OR4P4Q8NGL7 312 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 MBD3L1Q8WWY6 194 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 BPESC1Q9GZL8 116 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 ZNF430Q9H8G1 570 aaPredicted RBP6.82□□□□□ -1.32
USP54-203ENST00000418501 KIAA1324LA8MWY0 1029 aaPredicted RBP6.82□□□□□ -1.32
USP54-203ENST00000418501 J3QLI3 93 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 OVOL3O00110 214 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 IGLV1-47P01700 117 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 SSX2Q16385 188 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 C5orf30Q96GV9 206 aa6.82□□□□□ -1.32
USP54-203ENST00000418501 DNASE2O00115 360 aaPredicted RBP6.81□□□□□ -1.32
USP54-203ENST00000418501 COX7A2P2O60397 106 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 RPL29P47914 159 aaKnown RBP6.81□□□□□ -1.32
USP54-203ENST00000418501 PNRC1Q12796 327 aaPredicted RBP6.81□□□□□ -1.32
USP54-203ENST00000418501 VWC2Q2TAL6 325 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 NKX6-2Q9C056 277 aaPredicted RBP6.81□□□□□ -1.32
USP54-203ENST00000418501 GNG13Q9P2W3 67 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 HILPDAQ9Y5L2 63 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 PXMP4Q9Y6I8 212 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 CADP27708 2225 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 SFTA3P0C7M3 94 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 FLI1Q01543 452 aaPredicted RBP6.81□□□□□ -1.32
USP54-203ENST00000418501 SLC35E3Q7Z769 313 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 CENPVQ7Z7K6 275 aaPredicted RBP6.81□□□□□ -1.32
USP54-203ENST00000418501 ZNF843Q8N446 348 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 ST6GALNAC6Q969X2 333 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 C15orf62A8K5M9 175 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 CLN5O75503 358 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 CEBPGP53567 150 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 OR1P1Q8NH06 330 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 NDUFA4L2Q9NRX3 87 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 SHANK1Q9Y566 2161 aa6.81□□□□□ -1.32
USP54-203ENST00000418501 C22orf46C9J442 243 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 TIMM23O14925 209 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 TMEM50AO95807 157 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 CD69Q07108 199 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 GATAD1Q8WUU5 269 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 RPUSD4Q96CM3 377 aaKnown RBP6.8□□□□□ -1.32
USP54-203ENST00000418501 MISP3Q96FF7 219 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 ACY3Q96HD9 319 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 RSG1Q9BU20 258 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 SIGLEC9Q9Y336 463 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 B4DEV8 164 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 PDE6DO43924 150 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 RUNX1Q01196 453 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 C10orf105Q8TEF2 133 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 SH3BGRL3Q9H299 93 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 SMCO4Q9NRQ5 59 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 ELOA3CA0A087WX78 387 aaPredicted RBP6.8□□□□□ -1.32
USP54-203ENST00000418501 J3QKU1 62 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 IGKV1D-33P01593 117 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 IGKV1-33P01594 117 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 BCL2P10415 239 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 ZNF506Q5JVG8 444 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 FAM209BQ5JX69 171 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 PQLC2Q6ZP29 291 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 LRRC75A-AS1Q8N1F1 130 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 CARHSP1Q9Y2V2 147 aaKnown RBP6.8□□□□□ -1.32
USP54-203ENST00000418501 IGHV3-72A0A0B4J1Y9 119 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 A0A1B0GV50 99 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 S100PP25815 95 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 FXYD3Q14802 87 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 CDSNQ15517 529 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 ACSM6Q6P461 480 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 PERPQ96FX8 193 aa6.8□□□□□ -1.32
USP54-203ENST00000418501 POLR3KQ9Y2Y1 108 aaPredicted RBP6.8□□□□□ -1.32
USP54-203ENST00000418501 C19orf84I3L1E1 186 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 VENTXO95231 258 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 OPN1MWP04001 364 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 IGKV1-16P04430 117 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 OPN1MW2P0DN77 364 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 OPN1MW3P0DN78 364 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 PMS2P11Q13670 270 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 CLEC12BQ2HXU8 276 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 CLRN3Q8NCR9 226 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 NPFFO15130 113 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 IGHV4-39P01824 125 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 HAGHQ16775 308 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 ARSJQ5FYB0 599 aaPredicted RBP6.79□□□□□ -1.32
USP54-203ENST00000418501 LINC01356Q8N9X3 169 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 SRSF12Q8WXF0 261 aaKnown RBP6.79□□□□□ -1.32
USP54-203ENST00000418501 TVP23CQ96ET8 276 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 C12orf57Q99622 126 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 RPRMQ9NS64 109 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 PROP1O75360 226 aa6.79□□□□□ -1.32
USP54-203ENST00000418501 FAM53AQ6NSI3 398 aaPredicted RBP6.79□□□□□ -1.32
USP54-203ENST00000418501 BSCL2Q96G97 398 aaPredicted RBP6.79□□□□□ -1.32
USP54-203ENST00000418501 ANKHD1Q8IWZ3 2542 aaKnown RBP6.79□□□□□ -1.32
USP54-203ENST00000418501 TGOLN2O43493 480 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 MSMBP08118 114 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 CST9LP1Q5W188 147 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 ATRAIDQ6UW56 229 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 ZNF114Q8NC26 417 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms