RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GIMAP1Q8WWP7 306 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 QTRT1Q9BXR0 403 aaKnown RBP8.62□□□□□ -1.03
USP4-204ENST00000416417 IFT46Q9NQC8 304 aa8.62□□□□□ -1.03
USP4-204ENST00000416417 TGOLN2O43493 480 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 TRAPPC2P0DI81 140 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 TRAPPC2BP0DI82 140 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 C8orf88P0DMB2 117 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 PTBP1P26599 531 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP4-204ENST00000416417 G6PCP35575 357 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 LPAR6P43657 344 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 LSM3P62310 102 aaKnown RBP8.61□□□□□ -1.03
USP4-204ENST00000416417 POU2AF1Q16633 256 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 UBAC2Q8NBM4 344 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 ZNF2Q9BSG1 426 aaPredicted RBP8.61□□□□□ -1.03
USP4-204ENST00000416417 CHRDL1Q9BU40 450 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 C20orf24Q9BUV8 137 aa8.61□□□□□ -1.03
USP4-204ENST00000416417 ZNF436Q9C0F3 470 aaPredicted RBP8.61□□□□□ -1.03
USP4-204ENST00000416417 A0A0J9YWU9 116 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 DBX1A6NMT0 343 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 PGLYRP1O75594 196 aaPredicted RBP8.6□□□□□ -1.03
USP4-204ENST00000416417 KRASP01116 189 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 SERPINE2P07093 398 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 DEFB135Q30KP9 77 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 GDPD1Q8N9F7 314 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 FCAMRQ8WWV6 532 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 AIFM2Q9BRQ8 373 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 YTHDF1Q9BYJ9 559 aaKnown RBP8.6□□□□□ -1.03
USP4-204ENST00000416417 FXYD6Q9H0Q3 95 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 Q9H521 79 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 PLEKHA2Q9HB19 425 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 MRPL27Q9P0M9 148 aaKnown RBP8.6□□□□□ -1.03
USP4-204ENST00000416417 UFC1Q9Y3C8 167 aa8.6□□□□□ -1.03
USP4-204ENST00000416417 IGHV3-49A0A0A0MS15 119 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 A0A0A6YYH2 397 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 CXorf65A6NEN9 183 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 A6NJ64 397 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 MARCH11A6NNE9 402 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 F8W735 103 aaPredicted RBP8.59□□□□□ -1.03
USP4-204ENST00000416417 RPL35AP18077 110 aaKnown RBP8.59□□□□□ -1.03
USP4-204ENST00000416417 CBX5P45973 191 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 SCAND1P57086 179 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 TAS2R20P59543 309 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 ERVK-16P61578 105 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 ZNF124Q15973 351 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 ANKRD55Q3KP44 614 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 PHLDA2Q53GA4 152 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 OR2C3Q8N628 320 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 OR1L8Q8NGR8 309 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 TMEM190Q8WZ59 177 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 NDUFA4L2Q9NRX3 87 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 COMMD9Q9P000 198 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 OR51B2Q9Y5P1 312 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 TRAV25A0A0B4J276 109 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 XRCC3O43542 346 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 LY6G6CO95867 125 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 IGHV3-48P01763 117 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 F2RP25116 425 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 ADMP35318 185 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 RPS19P39019 145 aaKnown RBP8.59□□□□□ -1.03
USP4-204ENST00000416417 ODF3L2Q3SX64 289 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 SAMD12Q8N8I0 201 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 OR5B3Q8NH48 314 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 CD300LFQ8TDQ1 290 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 VN1R17PQ8TDU5 208 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 SCARB1Q8WTV0 552 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 MARC2Q969Z3 335 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 MOB3AQ96BX8 217 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 ZNF414Q96IQ9 312 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 C21orf62Q9NYP8 219 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 THYN1Q9P016 225 aa8.59□□□□□ -1.03
USP4-204ENST00000416417 F11RQ9Y624 299 aaKnown RBP8.59□□□□□ -1.03
USP4-204ENST00000416417 IGKV3-7A0A075B6H7 116 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 K7EIM0 57 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 CTSDP07339 412 aaPredicted RBP8.58□□□□□ -1.04
USP4-204ENST00000416417 HLA-DMAP28067 261 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 TFPI2P48307 235 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 ELLP55199 621 aaPredicted RBP8.58□□□□□ -1.04
USP4-204ENST00000416417 Q56UQ5 140 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 TMEM69Q5SWH9 247 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 DHRS11Q6UWP2 260 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 LYG2Q86SG7 212 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 LYSMD2Q8IV50 215 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 APRG1Q8IVJ8 170 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 SLC38A6Q8IZM9 456 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 OR5H2Q8NGV7 314 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 LINC00476Q8WZB0 136 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 DGCR14Q96DF8 476 aaKnown RBP8.58□□□□□ -1.04
USP4-204ENST00000416417 S100A16Q96FQ6 103 aaKnown RBP8.58□□□□□ -1.04
USP4-204ENST00000416417 SRSF8Q9BRL6 282 aaKnown RBP8.58□□□□□ -1.04
USP4-204ENST00000416417 C5orf66Q9H5L9 145 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 ANAPC10Q9UM13 185 aa8.58□□□□□ -1.04
USP4-204ENST00000416417 IGHV3OR16-13A0A075B7E8 117 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 IGHV3-74A0A0B4J1X5 117 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 TSPAN4O14817 238 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 SPRY2O43597 315 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 SNAPC5O75971 98 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 EIF4EP06730 217 aaKnown RBP8.57□□□□□ -1.04
USP4-204ENST00000416417 HRH1P35367 487 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 UBE2NLQ5JXB2 153 aa8.57□□□□□ -1.04
USP4-204ENST00000416417 TSPAN14Q8NG11 270 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms