RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TMEM69Q5SWH9 247 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 HCP5Q6MZN7 132 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 DHRS11Q6UWP2 260 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 OR2W3Q7Z3T1 314 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 LHFPL4Q7Z7J7 247 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 LITAFQ99732 161 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 BANF2Q9H503 90 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 C16orf95Q9H693 158 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 PLEKHJ1Q9NW61 149 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 GNG12Q9UBI6 72 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 TCF19Q9Y242 345 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 ALG5Q9Y673 324 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 A0A087X0K7 114 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 C7orf66A4D0T2 115 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 BUB1B-PAK6H3BSN5 160 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 ATP6V1G1O75348 118 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 TCRBP04435 133 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 CD3GP09693 182 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 BTCP35070 178 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 KIR2DS4P43632 304 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 HES1Q14469 280 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 ARL6IP1Q15041 203 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 NDUFA5Q16718 116 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 LTC4SQ16873 150 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 ZNF876PQ49A33 203 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 C1orf100Q5SVJ3 147 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 ZNF497Q6ZNH5 498 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 MOB1BQ7L9L4 216 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 TCF23Q7RTU1 214 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 OR56B1Q8NGI3 324 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 OR4P4Q8NGL7 312 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 GATAD1Q8WUU5 269 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 DIABLOQ9NR28 239 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 TAS2R8Q9NYW2 309 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 RBMX2Q9Y388 322 aaKnown RBP4.97□□□□□ -1.61
USP40-202ENST00000409945 DSCAML1Q8TD84 2053 aa4.97□□□□□ -1.61
USP40-202ENST00000409945 IGHV4-4A0A075B6R2 117 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 A0A0A6YYH2 397 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 METTL21EPA6NDL7 271 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 A6NJ64 397 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 MT-ND4P03905 459 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 GAPDHP04406 335 aaKnown RBP4.96□□□□□ -1.62
USP40-202ENST00000409945 CD37P11049 281 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 FAUP35544 74 aaKnown RBP4.96□□□□□ -1.62
USP40-202ENST00000409945 GNG10P50151 68 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 CLDN12P56749 244 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 RPS27AP62979 156 aaKnown RBP4.96□□□□□ -1.62
USP40-202ENST00000409945 SSBP1Q04837 148 aaKnown RBP4.96□□□□□ -1.62
USP40-202ENST00000409945 C17orf58Q2M2W7 97 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 ADAMTSL4-AS1Q5T5F5 129 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 TPTE2P1Q5T6R2 138 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 KRTAP5-3Q6L8H2 238 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 COX8CQ7Z4L0 72 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 OR56B4Q8NH76 319 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 LINC01006Q8NI28 216 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 RFESDQ8TAC1 157 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 PLPPR1Q8TBJ4 325 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 TMEM190Q8WZ59 177 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 GALMQ96C23 342 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 ASCL2Q99929 193 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 CITED1Q99966 193 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 LINC00574Q9H8X3 128 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 ZNF286AQ9HBT8 521 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 CACNG5Q9UF02 275 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 KIAA2026Q5HYC2 2103 aa4.96□□□□□ -1.62
USP40-202ENST00000409945 ANKRD20A5PA0PJZ0 165 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 SCGNO76038 276 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 IGLV1-47P01700 117 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 C1QBP02746 253 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 RPL35AP18077 110 aaKnown RBP4.95□□□□□ -1.62
USP40-202ENST00000409945 BLVRBP30043 206 aaPredicted RBP4.95□□□□□ -1.62
USP40-202ENST00000409945 SSTR5P35346 364 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 VDAC2P45880 294 aaPredicted RBP4.95□□□□□ -1.62
USP40-202ENST00000409945 NKX2-5P52952 324 aaPredicted RBP4.95□□□□□ -1.62
USP40-202ENST00000409945 TAS2R20P59543 309 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 ZNF329Q86UD4 541 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 C8orf31Q8N9H6 132 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 TMEM104Q8NE00 496 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 OR4K15Q8NH41 348 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 PTX4Q96A99 478 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 FAM3DQ96BQ1 224 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 MED28Q9H204 178 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 AUNIPQ9H7T9 357 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 GPN1Q9HCN4 374 aaPredicted RBP4.95□□□□□ -1.62
USP40-202ENST00000409945 OR2S2Q9NQN1 319 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 MCUBQ9NWR8 336 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 MBD2Q9UBB5 411 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 RAB22AQ9UL26 194 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 PSG11Q9UQ72 335 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 RNF24Q9Y225 148 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 A6NDX4 124 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 SULT1C2O00338 296 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 HSD17B6O14756 317 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 RBBP9O75884 186 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 MMP23AO75900 390 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 OR2F2O95006 317 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 RAB13P51153 203 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 ACTBP60709 375 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 HERV-K104P61576 105 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 HERPUD1Q15011 391 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms