RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LINC01559Q495D7 138 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 AARDQ4LEZ3 155 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 OR8G2PQ6IF36 304 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 SPSB3Q6PJ21 355 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 ZNF439Q8NDP4 499 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 ZNF418Q8TF45 676 aaPredicted RBP8.23□□□□□ -1.09
VPS53-202ENST00000389040 DDB2Q92466 427 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 RSG1Q9BU20 258 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 HIPK2Q9H2X6 1198 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 SIRT7Q9NRC8 400 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 IGHV2-26A0A0B4J1V2 119 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 UBE2L5PA0A1B0GUS4 154 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 LOC105371267A0A1B0GV96 52 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 CEBPZOSA8MTT3 80 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 NPFFO15130 113 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 OR9G9P0C7N8 305 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 IGHV4-38-2P0DP08 117 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 OR2B8PP59922 312 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 ERVK-16P61578 105 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 CCL20P78556 96 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 PRAMEF5Q5TYX0 476 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 RBMS3Q6XE24 437 aaKnown RBP8.23□□□□□ -1.09
VPS53-202ENST00000389040 ABHD12Q8N2K0 398 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 OR4S2Q8NH73 311 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 OR9G1Q8NH87 305 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 MALSU1Q96EH3 234 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 QTRT1Q9BXR0 403 aaKnown RBP8.23□□□□□ -1.09
VPS53-202ENST00000389040 WDR61Q9GZS3 305 aaKnown RBP8.23□□□□□ -1.09
VPS53-202ENST00000389040 AMMECR1Q9Y4X0 333 aaPredicted RBP8.23□□□□□ -1.09
VPS53-202ENST00000389040 TLN2Q9Y4G6 2542 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 ABCA2Q9BZC7 2435 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 DOCK11Q5JSL3 2073 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 MTORP42345 2549 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 ODF3BA8MYP8 253 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 OOSP1A8MZH6 123 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 HBE1P02100 147 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 FBP1P09467 338 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 NQO2P16083 231 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 ATF4P18848 351 aaPredicted RBP8.22□□□□□ -1.09
VPS53-202ENST00000389040 CEACAM3P40198 252 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 RAB2AP61019 212 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 SERF2P84101 59 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 ATP6V1FQ16864 119 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 SPINK9Q5DT21 86 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 DHRS7BQ6IAN0 325 aaPredicted RBP8.22□□□□□ -1.09
VPS53-202ENST00000389040 HCP5Q6MZN7 132 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 TMEM88Q6PEY1 159 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 SSX9Q7RTT3 188 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 LYG1Q8N1E2 194 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 LINC00311Q8N616 119 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 OR4A16Q8NH70 328 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 SFT2D1Q8WV19 159 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 PINX1Q96BK5 328 aaKnown RBP8.22□□□□□ -1.09
VPS53-202ENST00000389040 SLC35B3Q9H1N7 401 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 SMDT1Q9H4I9 107 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 KIAA1456Q9P272 454 aa8.22□□□□□ -1.09
VPS53-202ENST00000389040 NSD1Q96L73 2696 aaPredicted RBP8.22□□□□□ -1.09
VPS53-202ENST00000389040 PMS2P5A8MQ11 134 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 MMP23AO75900 390 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 IGLV1-47P01700 117 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 HTR1DP28221 377 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 THBS3P49746 956 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 GNG10P50151 68 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 RIPPLY3P57055 190 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 VKORC1L1Q8N0U8 176 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 PNKDQ8N490 385 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 TMEM86BQ8N661 226 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 CLRN3Q8NCR9 226 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 TAF15Q92804 592 aaKnown RBP eCLIP8.21□□□□□ -1.09
VPS53-202ENST00000389040 RBMXL1Q96E39 390 aaKnown RBP8.21□□□□□ -1.09
VPS53-202ENST00000389040 ADTRPQ96IZ2 230 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 ZNF251Q9BRH9 671 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 TMEM147Q9BVK8 224 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 MEGF9Q9H1U4 602 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 TIMM9Q9Y5J7 89 aa8.21□□□□□ -1.09
VPS53-202ENST00000389040 NAV3Q8IVL0 2385 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 TRAV1-1A0A0B4J248 108 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 RBFOX3A6NFN3 312 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 CLDN34H7C241 214 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 LY86O95711 162 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 IFNA17P01571 189 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 ARG1P05089 322 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 SAA4P35542 130 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 SPCS3P61009 180 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 PDLIM3Q53GG5 364 aaPredicted RBP8.21□□□□□ -1.1
VPS53-202ENST00000389040 CCDC144NLQ6NUI1 221 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 SLC25A48Q6ZT89 311 aaKnown RBP8.21□□□□□ -1.1
VPS53-202ENST00000389040 CBLN2Q8IUK8 224 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 ZNF383Q8NA42 475 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 OR10P1Q8NGE3 313 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 OR52E5Q8NH55 327 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 RARRES2Q99969 163 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 RPRMQ9NS64 109 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 TMEM140Q9NV12 185 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 DPM3Q9P2X0 92 aa8.21□□□□□ -1.1
VPS53-202ENST00000389040 J3QR06 171 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 SCAF4O95104 1147 aaKnown RBP8.2□□□□□ -1.1
VPS53-202ENST00000389040 IL3RAP26951 378 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 RELBQ01201 579 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 HLA-DRB5Q30154 266 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms