RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HBG2P69892 147 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 SERF2P84101 59 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 ARL16Q0P5N6 197 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 DNLZQ5SXM8 178 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 SSX3Q99909 188 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 CTDSP1Q9GZU7 261 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 OR2D2Q9H210 308 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 PSG11Q9UQ72 335 aa10.17□□□□□ -0.78
CIITA-202ENST00000381835 TSTD3H0UI37 97 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 MDKP21741 143 aaPredicted RBP10.16□□□□□ -0.78
CIITA-202ENST00000381835 PCP4P48539 62 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 SPCS3P61009 180 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 LRRC75BQ2VPJ9 315 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 FAM168AQ92567 244 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 HIST1H2BLQ99880 126 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 SSBP3Q9BWW4 388 aaPredicted RBP10.16□□□□□ -0.78
CIITA-202ENST00000381835 PRO1933Q9H354 126 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 PITPNC1Q9UKF7 332 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 APCP25054 2843 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 MAP1LC3B2A6NCE7 125 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 YPEL1O60688 119 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 ZNF16P17020 682 aaPredicted RBP10.16□□□□□ -0.78
CIITA-202ENST00000381835 DDTP30046 118 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 ELLP55199 621 aaPredicted RBP10.16□□□□□ -0.78
CIITA-202ENST00000381835 TMEM41BQ5BJD5 291 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 OR10A7Q8NGE5 316 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 LSM10Q969L4 123 aaKnown RBP10.16□□□□□ -0.78
CIITA-202ENST00000381835 YPEL2Q96QA6 119 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 MAP1LC3BQ9GZQ8 125 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 RBKSQ9H477 322 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 LINC00574Q9H8X3 128 aa10.16□□□□□ -0.78
CIITA-202ENST00000381835 RPUSD1Q9UJJ7 312 aaKnown RBP10.16□□□□□ -0.78
CIITA-202ENST00000381835 PPIAL4CA0A0B4J2A2 164 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 PHOX2AO14813 284 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 IGKV1-39P01597 117 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 IGLV2-14P01704 120 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 IGKV1D-39P04432 117 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 PPIAL4GP0DN37 164 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 GNG10P50151 68 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 ZNF134P52741 427 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 ADIRFQ15847 76 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 SPANXN5Q5MJ07 72 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 CLEC2AQ6UVW9 174 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 SSX9Q7RTT3 188 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 PINX1Q96BK5 328 aaKnown RBP10.15□□□□□ -0.78
CIITA-202ENST00000381835 NAV2Q8IVL1 2488 aa10.15□□□□□ -0.78
CIITA-202ENST00000381835 NCR3LG1Q68D85 454 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 HAPLN4Q86UW8 402 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 DRAM1Q8N682 238 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 ZNF645Q8N7E2 425 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 OR4X1Q8NH49 305 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 LHX4Q969G2 390 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 SMIM7Q9BQ49 75 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 PIMREGQ9BSJ6 248 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 WDR61Q9GZS3 305 aaKnown RBP10.15□□□□□ -0.79
CIITA-202ENST00000381835 SLC39A9Q9NUM3 307 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 NAT8Q9UHE5 227 aa10.15□□□□□ -0.79
CIITA-202ENST00000381835 A0A087X0M5 115 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 A0A1B0GX30 115 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 C22orf46C9J442 243 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 SLC31A2O15432 143 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 IGKV1-5P01602 117 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 REC114Q7Z4M0 266 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 OR4C12Q96R67 309 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 AGMATQ9BSE5 352 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 SRD5A3Q9H8P0 318 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 GAB2Q9UQC2 676 aa10.14□□□□□ -0.79
CIITA-202ENST00000381835 TMEM238LA0A1B0GVL6 79 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 IFNA10P01566 189 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 DLX6P56179 175 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 SSX2Q16385 188 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 TMEM241Q24JQ0 296 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 CT45A1Q5HYN5 189 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 BTNL3Q6UXE8 466 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 C16orf82Q7Z2V1 217 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 TMEM183AQ8IXX5 376 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 NECAP1Q8NC96 275 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 OR5R1Q8NH85 324 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 CT45A3Q8NHU0 189 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 CSMD1Q96PZ7 3565 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 LOC105371242A0A075B767 164 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 UBE2L5PA0A1B0GUS4 154 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 A0A1B0GV90 55 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 GPR12P47775 334 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 DLX1P56177 255 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 C10orf105Q8TEF2 133 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 TAF15Q92804 592 aaKnown RBP eCLIP10.13□□□□□ -0.79
CIITA-202ENST00000381835 LIN7CQ9NUP9 197 aaKnown RBP10.13□□□□□ -0.79
CIITA-202ENST00000381835 ONECUT1Q9UBC0 465 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 SVEP1Q4LDE5 3571 aa10.13□□□□□ -0.79
CIITA-202ENST00000381835 LIPFP07098 398 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 IGHV1-8P0DP01 117 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 ZFP36P26651 326 aaKnown RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 LMO4P61968 165 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 LCN2P80188 198 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 MEF2BQ02080 365 aaPredicted RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 SLC38A11Q08AI6 406 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 HNF4GQ14541 408 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 BSXQ3C1V8 233 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 TMEM30BQ3MIR4 351 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms