RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 RPL27AP46776 148 aaKnown RBP7.5□□□□□ -1.21
LIG3-202ENST00000378526 ACTL10Q5JWF8 245 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 NKX2-2O95096 273 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 RPL23P62829 140 aaKnown RBP7.5□□□□□ -1.21
LIG3-202ENST00000378526 MPV17L2Q567V2 206 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 AMN1Q8IY45 258 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 DUSP15Q9H1R2 295 aaPredicted RBP7.5□□□□□ -1.21
LIG3-202ENST00000378526 RAMP1O60894 148 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 CCL20P78556 96 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 IFITM3Q01628 133 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 LINC00305Q7Z4B0 112 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 RPRMLQ8N4K4 120 aa7.5□□□□□ -1.21
LIG3-202ENST00000378526 SHANK1Q9Y566 2161 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 PDCD1Q15116 288 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 DTX1Q86Y01 620 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 ZNF236Q9UL36 1845 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 IGKV3D-15A0A087WSY6 115 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 TRAV8-3A0A0A6YYJ7 113 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 IGKV3OR2-268A0A0C4DH90 116 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 K7EP34 96 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 IGKV3-15P01624 115 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 GNG5P63218 68 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 C20orf144Q9BQM9 153 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 YBX2Q9Y2T7 364 aaKnown RBP7.49□□□□□ -1.21
LIG3-202ENST00000378526 BGLAPP02818 100 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 ATP5G1P05496 136 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 ID4P47928 161 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 ATP5G3P48201 142 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 ATP5G2Q06055 141 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 ZP4Q12836 540 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 DENND4AQ7Z401 1863 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 A0A1W2PRE2 83 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 SRFP11831 508 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 TMEM42Q69YG0 159 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 GLRX5Q86SX6 157 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 VPREB1P12018 145 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 PIGYQ3MUY2 71 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 INO80CQ6PI98 192 aaPredicted RBP7.49□□□□□ -1.21
LIG3-202ENST00000378526 DUX4L9Q6RFH8 374 aaPredicted RBP7.49□□□□□ -1.21
LIG3-202ENST00000378526 WFDC6Q9BQY6 131 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 TMEM74BQ9NUR3 256 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 A0A1B0GW64 132 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 FNDC10F2Z333 226 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 VSIG8P0DPA2 414 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 COX7A1P24310 79 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 C6orf15Q6UXA7 325 aaPredicted RBP7.49□□□□□ -1.21
LIG3-202ENST00000378526 RGPD8O14715 1765 aaPredicted RBP7.49□□□□□ -1.21
LIG3-202ENST00000378526 PRSS47A8MTI9 375 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 CEACAM1P13688 526 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 LIMS1P48059 325 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 SYNJ2BPP57105 145 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 TMEM52BQ4KMG9 183 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 FGFRL1Q8N441 504 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 DSCR8Q96T75 97 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 C5orf66Q9H5L9 145 aa7.49□□□□□ -1.21
LIG3-202ENST00000378526 TRIOBPQ9H2D6 2365 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 ACRP10323 421 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 DUX5Q96PT3 197 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 HCFC1R1Q9NWW0 138 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 USP54Q70EL1 1684 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 TRAV24A0A0B4J272 114 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 A0A0J9YW62 118 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 J3QT63 122 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 CXCL13O43927 109 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 FAM106CPP0CH98 169 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 FOXF1Q12946 379 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 PCSK4Q6UW60 755 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 RIMBP3CA6NJZ7 1639 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 RIMBP3BA6NNM3 1639 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 RIMBP3Q9UFD9 1639 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 COL6A6A6NMZ7 2263 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 IGLV3-10A0A075B6K4 115 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 COX5BP10606 129 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 RNF166Q96A37 237 aaPredicted RBP7.48□□□□□ -1.21
LIG3-202ENST00000378526 GREB1LQ9C091 1923 aaPredicted RBP7.48□□□□□ -1.21
LIG3-202ENST00000378526 CTLA4P16410 223 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 UCP1P25874 307 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 GCSAMQ8N6F7 178 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 TMEM243Q9BU79 118 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 SARGQ9BW04 601 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 ALS2Q96Q42 1657 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 SNED1Q8TER0 1413 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 M0R381 172 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 UPK3AO75631 287 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 FAM106AQ4KMX7 169 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 TEX38Q6PEX7 206 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 SLC37A2Q8TED4 501 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 C20orf173Q96LM9 149 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 RGPD5Q99666 1765 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 NBEAP1P0C6P0 100 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 DEFB115Q30KQ5 88 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 KCNK17Q96T54 332 aa7.48□□□□□ -1.21
LIG3-202ENST00000378526 SCO2A0A1W2PP80 73 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 CGB1A6NKQ9 187 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 CCL11P51671 97 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 ECSCRQ19T08 205 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 CCL17Q92583 94 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 WBP1LQ9NX94 342 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 SYS1-DBNDD2H3BUS1 97 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 FGF12P61328 243 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms