RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 ZNRF1Q8ND25 227 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 TMEM222Q9H0R3 208 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 WDR54Q9H977 334 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 ASB1Q9Y576 335 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 SNAI2O43623 268 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 OR2H2O95918 312 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 CGB7P0DN87 165 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 CD28P10747 220 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 HS3ST3B1Q9Y662 390 aa9.1□□□□□ -0.95
RTN3-206ENST00000377819 MYH9P35579 1960 aaKnown RBP9.1□□□□□ -0.95
RTN3-206ENST00000377819 FABP5P3A8MUU1 101 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 PTGDSP41222 190 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 TTTY12Q9BZ98 90 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 KLF12Q9Y4X4 402 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 DICER1Q9UPY3 1922 aaKnown RBP9.09□□□□□ -0.95
RTN3-206ENST00000377819 REG1AP05451 166 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 C2orf68Q2NKX9 166 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 C3orf36Q3SXR2 165 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 STPG1Q5TH74 334 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 OPN3Q9H1Y3 402 aaPredicted RBP9.09□□□□□ -0.95
RTN3-206ENST00000377819 LTBRP36941 435 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 PRSS41Q7RTY9 318 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 LINC00305Q7Z4B0 112 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 ATG4DQ86TL0 474 aaPredicted RBP9.09□□□□□ -0.95
RTN3-206ENST00000377819 INSL4Q14641 139 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 TEX45Q8NA69 505 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 C14orf144Q96I85 54 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 SIGMAR1Q99720 223 aa9.09□□□□□ -0.95
RTN3-206ENST00000377819 PCNX2A6NKB5 2137 aa9.09□□□□□ -0.96
RTN3-206ENST00000377819 H3BUT2 72 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 LINC01565O15544 149 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 PPP1R27Q86WC6 154 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 FAM168AQ92567 244 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 TRGV11A0A075B6L2 103 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 A0A0U1RQV5 110 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 GRIFINA4D1Z8 144 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 PGPEP1LA6NFU8 196 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 RCC1P18754 421 aaPredicted RBP9.08□□□□□ -0.96
RTN3-206ENST00000377819 CCL1P22362 96 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 RNASE4P34096 147 aaKnown RBP9.08□□□□□ -0.96
RTN3-206ENST00000377819 TNFRSF9Q07011 255 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 OCIAD2Q56VL3 154 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 CENPWQ5EE01 88 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 OVOL2Q9BRP0 275 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 TNFRSF12AQ9NP84 129 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 SERGEFQ9UGK8 458 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 SONP18583 2426 aaKnown RBP9.08□□□□□ -0.96
RTN3-206ENST00000377819 HEATR5BQ9P2D3 2071 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 NTN1O95631 604 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 EFEMP2O95967 443 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 ZNF250P15622 560 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 ORMDL2Q53FV1 153 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 ZNF826PQ6ZT77 177 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 RTN4RL2Q86UN3 420 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 PDFQ9HBH1 243 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.08□□□□□ -0.96
RTN3-206ENST00000377819 IGF2P01344 180 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 GCHFRP30047 84 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 PEAR1Q5VY43 1037 aaPredicted RBP9.08□□□□□ -0.96
RTN3-206ENST00000377819 RASL11AQ6T310 242 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 SNHG12Q9BXW3 62 aa9.08□□□□□ -0.96
RTN3-206ENST00000377819 MOSP00540 346 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 IGHV3-48P01763 117 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 RPL36AP83881 106 aaKnown RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 OSR1Q8TAX0 266 aaPredicted RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 ZPLD1Q8TCW7 415 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 NEU4Q8WWR8 484 aaPredicted RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 RPL36ALQ969Q0 106 aaKnown RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 TMEM30AQ9NV96 361 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 TMEM238C9JI98 176 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 PPBPP02775 128 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 C9orf50Q5SZB4 431 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 ZNF600Q6ZNG1 722 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 NRN1Q9NPD7 142 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 DUTP33316 252 aaKnown RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 SRSF1Q07955 248 aaKnown RBP eCLIP9.07□□□□□ -0.962e-7■■□□□ 13.4
RTN3-206ENST00000377819 ZFAND6Q6FIF0 208 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 ZNF385AQ96PM9 386 aaKnown RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 SLC50A1Q9BRV3 221 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 WBP1LQ9NX94 342 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 PHIPQ8WWQ0 1821 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 SCN9AQ15858 1988 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 IGHV3-66A0A0C4DH42 116 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 HYAL3O43820 417 aaPredicted RBP9.07□□□□□ -0.96
RTN3-206ENST00000377819 MESP2Q0VG99 397 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 GFI1BQ5VTD9 330 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 FAM60AQ9NP50 221 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 DOCK9Q9BZ29 2069 aa9.07□□□□□ -0.96
RTN3-206ENST00000377819 ARHGEF17Q96PE2 2063 aaPredicted RBP9.06□□□□□ -0.96
RTN3-206ENST00000377819 A0A0J9YW62 118 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 UPK3AO75631 287 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 VENTXO95231 258 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 IGHV3-11P01762 117 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 EFNB1P98172 346 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 TBR1Q16650 682 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 MUC21Q5SSG8 566 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 VN1R4Q7Z5H5 301 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 H0YL77 283 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 CDC42EP2O14613 210 aa9.06□□□□□ -0.96
RTN3-206ENST00000377819 ITGB1BP1O14713 200 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms