RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MALRD1Q5VYJ5 2156 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 Q6ZRN7 208 aaPredicted RBP0.76□□□□□ -2.29
VPS13A-206ENST00000376646 CPAMD8Q8IZJ3 1885 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF676Q8N7Q3 588 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 CCDC42Q96M95 316 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 PKIGQ9Y2B9 76 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 GREB1Q4ZG55 1949 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 RALGAPA2Q2PPJ7 1873 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 STAB1Q9NY15 2570 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 DCCP43146 1447 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 A0A1B0GV50 99 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 HMSDA8MTL9 139 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 OR5G3P0C626 314 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 SULT1A1P50225 295 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 RELAQ04206 551 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 NUMA1Q14980 2115 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 GRK1Q15835 563 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 HIST3H3Q16695 136 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 GLT8D1Q68CQ7 371 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 TMEM42Q69YG0 159 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 DCXRQ7Z4W1 244 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 SLC7A6Q92536 515 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 PPP1R14BQ96C90 147 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 IMP4Q96G21 291 aaKnown RBP0.76□□□□□ -2.29
VPS13A-206ENST00000376646 DOHHQ9BU89 302 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 EFCAB1Q9HAE3 211 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 CISHQ9NSE2 258 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 IL36BQ9NZH7 164 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 MYO3BQ8WXR4 1341 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 MED1Q15648 1581 aaPredicted RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 KDM6BO15054 1643 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 TRBV20OR9-2A0A075B6H5 130 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 A0A0D9SEW6 157 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 TRAPPC2LH3BP13 241 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF737O75373 536 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 C1QCP02747 245 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 GPX1P07203 203 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 CD79AP11912 226 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 EVX1P49640 407 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 FAM27BQ5VT28 67 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 SLC36A1Q7Z2H8 476 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 COA5Q86WW8 74 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 C1orf158Q8N1D5 194 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 RPP25LQ8N5L8 163 aaKnown RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 CHST6Q9GZX3 395 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 RSL24D1Q9UHA3 163 aaKnown RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 MED14O60244 1454 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 FN1P02751 2386 aaKnown RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 MAST2Q6P0Q8 1798 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 PSMD12O00232 456 aaPredicted RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 CHP2O43745 196 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 NOS1APO75052 506 aaPredicted RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 NAPSAO96009 420 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 IGHV3-7P01780 117 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 SERPINA7P05543 415 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 MSMBP08118 114 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 SULT1A3P0DMM9 295 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 SULT1A4P0DMN0 295 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 CEBPGP53567 150 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 DEFA1P59665 94 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H4AP62805 103 aaKnown RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 Q6ZS49 121 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 TRAPPC5Q8IUR0 188 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 PPP1R2P1Q96PQ5 205 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 HSPB9Q9BQS6 159 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 WDR61Q9GZS3 305 aaKnown RBP0.75□□□□□ -2.29
VPS13A-206ENST00000376646 C8orf4Q9NR00 106 aa0.75□□□□□ -2.29
VPS13A-206ENST00000376646 EPG5Q9HCE0 2579 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 PLB1Q6P1J6 1458 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 SCAF11Q99590 1463 aaKnown RBP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 VWFP04275 2813 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 DISP1Q96F81 1524 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 ORC5O43913 435 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 RPP14O95059 124 aaKnown RBP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 PRM2P04554 102 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 SERPINA6P08185 405 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 RPL5P46777 297 aaKnown RBP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 EIF2B2P49770 351 aaKnown RBP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 RPL18Q07020 188 aaKnown RBP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 SYPL2Q5VXT5 272 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 DYNAPQ8N1N2 210 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 MRPL30Q8TCC3 161 aaKnown RBP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 CST9LQ9H4G1 147 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 DOK5Q9P104 306 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 VPS29Q9UBQ0 182 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 DOPEY1Q5JWR5 2465 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 HEATR5AQ86XA9 2040 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 WRNQ14191 1432 aaPredicted RBP eCLIP0.74□□□□□ -2.29
VPS13A-206ENST00000376646 CCDC88AQ3V6T2 1871 aa0.74□□□□□ -2.29
VPS13A-206ENST00000376646 MACF1Q9UPN3 7388 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 TRGV2A0A075B6R0 118 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 IGKV1D-43A0A0B4J1Z2 117 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 MEIS3P1A6NDR6 274 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 CLDN24A6NM45 220 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 FAAHO00519 579 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 SLC22A1O15245 554 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 E2F6O75461 281 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 CIAO1O76071 339 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HLA-DRB1P01911 266 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 C1QAP02745 245 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms