RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ZNF318Q5VUA4 2279 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 PRR32B1ATL7 298 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 LYNX1G3V0Z9 82 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 WISP3O95389 354 aaPredicted RBP11.59□□□□□ -0.55
COL4A1-201ENST00000375820 CECR9P0C854 216 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 LYNX1P0DP58 116 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 NSUN5P1Q3KNT7 163 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 TCF23Q7RTU1 214 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 SSBP4Q9BWG4 385 aaPredicted RBP11.59□□□□□ -0.55
COL4A1-201ENST00000375820 A0A1B0GWB2 263 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 DMRTA1Q5VZB9 504 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 SMDT1Q9H4I9 107 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 RGPD4Q7Z3J3 1758 aa11.59□□□□□ -0.55
COL4A1-201ENST00000375820 PLXNB2O15031 1838 aa11.58□□□□□ -0.55
COL4A1-201ENST00000375820 ZNF708P17019 499 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 COPS9Q8WXC6 57 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 C12orf77C9JDV5 145 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 NPC2P61916 151 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 MRPL32Q9BYC8 188 aaKnown RBP11.58□□□□□ -0.56
COL4A1-201ENST00000375820 B9A039 149 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 MSGN1A6NI15 193 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 EVI2AP22794 236 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 NUTF2P61970 127 aaKnown RBP11.58□□□□□ -0.56
COL4A1-201ENST00000375820 RPRMQ9NS64 109 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 LINC00527Q9UJ94 153 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 ANKRD31Q8N7Z5 1873 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 FBLN7Q53RD9 439 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 ARPC1AQ92747 370 aa11.58□□□□□ -0.56
COL4A1-201ENST00000375820 ZNF837Q96EG3 531 aaPredicted RBP11.58□□□□□ -0.56
COL4A1-201ENST00000375820 FAM169BQ8N8A8 192 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 LINC00614P0C842 121 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 CCL3L1P16619 93 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 LEPP41159 167 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 TMEM183AQ8IXX5 376 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 FAM168AQ92567 244 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 ARAP2Q8WZ64 1704 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 LNP1A1A4G5 178 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 IFI27L2Q9H2X8 130 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 CFAP161Q6P656 301 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 RCC1LQ96I51 464 aaKnown RBP11.57□□□□□ -0.56
COL4A1-201ENST00000375820 RNASE7Q9H1E1 156 aaKnown RBP11.57□□□□□ -0.56
COL4A1-201ENST00000375820 ADAMTSL3P82987 1691 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A26D6RGX4 464 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 CD33P20138 364 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 UNQ9370/PRO34162Q6UXP9 181 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 JMJD8Q96S16 334 aa11.57□□□□□ -0.56
COL4A1-201ENST00000375820 SHANK3Q9BYB0 1731 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A10PA6NDY2 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A18PA6NE21 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A16PA6NEW6 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A20PA6NIJ5 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A8PA6NJQ4 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A7PA6NKC0 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A22PA8MWA6 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A12PA8MX19 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A5PA8MXJ8 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A23PA8MXZ1 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 CA1P00915 261 aaPredicted RBP11.56□□□□□ -0.56
COL4A1-201ENST00000375820 CD7P09564 240 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A15PP0C7V4 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A13PP0C7W8 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A14PP0C7W9 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 FAM90A24PP0C7X0 464 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 LTBRP36941 435 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 Q5PR19 223 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 ABHD17AQ96GS6 310 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 LOC390937A0A1W2PQ73 354 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 HOXA5P20719 270 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 COLCA1Q6ZS62 124 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 PPP1R32Q7Z5V6 425 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 SP7Q8TDD2 431 aaPredicted RBP11.56□□□□□ -0.56
COL4A1-201ENST00000375820 TBR1Q16650 682 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 CNTFRP26992 372 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 Q9H3A6 140 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 PCP4P48539 62 aa11.56□□□□□ -0.56
COL4A1-201ENST00000375820 MEF2CQ06413 473 aaPredicted RBP11.56□□□□□ -0.56
COL4A1-201ENST00000375820 LINC01590Q5TEZ4 76 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 Q6ZT83 130 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 OR52E5Q8NH55 327 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 IFITM2Q01629 132 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 SAXO1Q8IYX7 474 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 SPSB2Q99619 263 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 NPDC1Q9NQX5 325 aaPredicted RBP11.55□□□□□ -0.56
COL4A1-201ENST00000375820 C21orf62Q9NYP8 219 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 EFEMP2O95967 443 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 SAPCD1Q5SSQ6 148 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 POLR2AP24928 1970 aaKnown RBP11.55□□□□□ -0.56
COL4A1-201ENST00000375820 IFNL4K9M1U5 179 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 RAB9AP51151 201 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 OR5A1Q8NGJ0 315 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 TXNDC17Q9BRA2 123 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 USP54Q70EL1 1684 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 STHQ8IWL8 128 aa11.55□□□□□ -0.56
COL4A1-201ENST00000375820 TMEM14DPA8MWL7 114 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 RIPPLY3P57055 190 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 ZNF415Q09FC8 603 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 ZNF703Q9H7S9 590 aaPredicted RBP11.54□□□□□ -0.56
COL4A1-201ENST00000375820 DPM3Q9P2X0 92 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 IGHV3-73A0A0B4J1V6 119 aa11.54□□□□□ -0.56
COL4A1-201ENST00000375820 IGHV1-2P23083 117 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms