RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SHISA4Q96DD7 197 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SFT2D2O95562 160 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 PSG1P11464 419 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 FOLR2P14207 255 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 EMDP50402 254 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 POLR2GP62487 172 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-202ENST00000375405 KISS1Q15726 138 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 UTF1Q5T230 341 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SLC25A34Q6PIV7 304 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 UMODL1-AS1Q8N2C9 162 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TPRX1Q8N7U7 411 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 ST8SIA1Q92185 356 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 CYTL1Q9NRR1 136 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TRAV30A0A087WSZ9 112 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SOCS3O14543 225 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 PFN2P35080 140 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SPRED2Q7Z698 418 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 IGFBPL1Q8WX77 278 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SIGLEC12Q96PQ1 595 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TRDCB7Z8K6 153 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 ARIH2OSQ8N7S6 290 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 PLPPR1Q8TBJ4 325 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 LEAP2Q969E1 77 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TEX37Q96LM6 180 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 WFDC6Q9BQY6 131 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 GLIPR2Q9H4G4 154 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SYS1-DBNDD2H3BUS1 97 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SNRPEP62304 92 aaKnown RBP3.98□□□□□ -1.77
SCN1A-202ENST00000375405 EGR3Q06889 387 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 MAVSQ7Z434 540 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM99Q8N816 258 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 ABHD17AQ96GS6 310 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 ATP6V0BQ99437 205 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 SCRT2Q9NQ03 307 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 CBLN4Q9NTU7 201 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 LAMB4A4D0S4 1761 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 THADAQ6YHU6 1953 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 LINC00587B1AMM8 73 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 C2CD4DB7Z1M9 353 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 NPIPB11E5RHQ5 1161 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 IGHV4-59P01825 116 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 LCNL1Q6ZST4 164 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 MRPL55Q7Z7F7 128 aaKnown RBP3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM54Q969K7 222 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 TM2D2Q9BX73 214 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 PSORS1C1Q9UIG5 152 aa3.98□□□□□ -1.77
SCN1A-202ENST00000375405 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 MBD3L4A6NDZ8 208 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 MBD3L3A6NE82 208 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 MBD3L5A6NJ08 208 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 NPIPB8E9PQR5 432 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 NPIPB9F8W1W9 429 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 HYAL3O43820 417 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 RCC1P18754 421 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 TIRAPP58753 221 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 PSMG4Q5JS54 123 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 MBD3L2Q8NHZ7 208 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 BRK1Q8WUW1 75 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CFHR4Q92496 578 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 SDHCQ99643 169 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 TBC1D29Q9UFV1 150 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 DMRT1Q9Y5R6 373 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 SLIT2O94813 1529 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CSPG4Q6UVK1 2322 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 DOPEY1Q5JWR5 2465 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 MLNRO43193 412 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 IGKV1D-33P01593 117 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 IGKV1-33P01594 117 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 ARL14EPLP0DKL9 152 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 PAX1P15863 534 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 P2RY6Q15077 328 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CYB5R2Q6BCY4 276 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 ST6GALNAC6Q969X2 333 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 EPDR1Q9UM22 224 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 RPL8P62917 257 aaKnown RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 ICAM4Q14773 271 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 STPG1Q5TH74 334 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 OR10S1Q8NGN2 331 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 WBP1LQ9NX94 342 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 PCNX1Q96RV3 2341 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 LRRK1Q38SD2 2015 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 IGLV2-23P01705 113 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 IGHG4P01861 327 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 HLA-DQB1P01920 261 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 UBE2D1P51668 147 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 SIGLEC15Q6ZMC9 328 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 LMO3Q8TAP4 145 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 HMSDA8MTL9 139 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 H0YIG0 161 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CA11O75493 328 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 GATA2P23769 480 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 SSBP2P81877 361 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 RFLNAQ6ZTI6 216 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CBLL1Q75N03 491 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 CD177Q8N6Q3 437 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 LAT2Q9GZY6 243 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 RBFOX1Q9NWB1 397 aaKnown RBP3.97□□□□□ -1.77
SCN1A-202ENST00000375405 TECTAO75443 2155 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE7O76087 117 aa3.97□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE12FP0CL80 117 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms