RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FAM212BQ9NTI7 297 aaPredicted RBP16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 THYN1Q9P016 225 aa16.39■□□□□ 0.21
CCDC28B-201ENST00000373602 A8MWP6 167 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 SERPINE2P07093 398 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 OR13C7P0DN81 318 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 CBLN1P23435 193 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 PTBP1P26599 531 aaKnown RBP eCLIP16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 UCP3P55916 312 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 WT1-ASQ06250 92 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 HAGHQ16775 308 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 MUC7Q8TAX7 377 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 TUBA4BQ9H853 241 aa16.38■□□□□ 0.21
CCDC28B-201ENST00000373602 TMEM213A2RRL7 107 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 FAM25AB3EWG3 89 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 FAM25CB3EWG5 89 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 FAM25GB3EWG6 89 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 CYB5BO43169 146 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 SNAPC5O75971 98 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 ZNF182P17025 639 aaPredicted RBP16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 S100GP29377 79 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 CD81P60033 236 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 VN1R17PQ8TDU5 208 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 AP3S1Q92572 193 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 CITED4Q96RK1 184 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 NEURL2Q9BR09 285 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 SLC2A8Q9NY64 477 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 NSG2Q9Y328 171 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 OR51B2Q9Y5P1 312 aa16.37■□□□□ 0.21
CCDC28B-201ENST00000373602 NBEAL2Q6ZNJ1 2754 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 ZNF320A2RRD8 509 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 GPR183P32249 361 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 TBC1D26Q86UD7 250 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 SLC38A6Q8IZM9 456 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 CACNG8Q8WXS5 425 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 LSM10Q969L4 123 aaKnown RBP16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 SPATA25Q9BR10 227 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 PRNDQ9UKY0 176 aa16.36■□□□□ 0.21
CCDC28B-201ENST00000373602 CD7P09564 240 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 GUCA2BQ16661 112 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 GPR107Q5VW38 600 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 SLC25A24Q6NUK1 477 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 TSC22D3Q99576 134 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 HINT2Q9BX68 163 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 PLEKHA3Q9HB20 300 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 FKBP11Q9NYL4 201 aa16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 F11RQ9Y624 299 aaKnown RBP16.35■□□□□ 0.21
CCDC28B-201ENST00000373602 M0QYG6 137 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 TPPPO94811 219 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 MFAP2P55001 183 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 PLET1Q6UQ28 207 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 UNQ9165/PRO28630Q6UXU0 137 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 LINC00322Q6ZN03 302 aaPredicted RBP16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 UXS1Q8NBZ7 420 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 OR5B3Q8NH48 314 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 WDR89Q96FK6 387 aaPredicted RBP16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 TMEM14BQ9NUH8 114 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 EXTL2Q9UBQ6 330 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 KLK11Q9UBX7 282 aa16.34■□□□□ 0.21
CCDC28B-201ENST00000373602 DBX1A6NMT0 343 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 C15orf61A6NNL5 157 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 TGOLN2O43493 480 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 IGKV1-39P01597 117 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 IGKV1D-39P04432 117 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 TM4SF20Q53R12 229 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 RNASE12Q5GAN4 147 aaKnown RBP16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 CASC10Q5T4H9 136 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 ZNF57Q68EA5 555 aaPredicted RBP16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 SEC22AQ96IW7 307 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 TMEM56Q96MV1 263 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 ZNF436Q9C0F3 470 aaPredicted RBP16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 PALMDQ9NP74 551 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 MLXQ9UH92 298 aa16.33■□□□□ 0.2
CCDC28B-201ENST00000373602 C8orf88P0DMB2 117 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 ALDH3B2P48448 385 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 ELLP55199 621 aaPredicted RBP16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 LHFPL1Q86WI0 220 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 TMEM61Q8N0U2 210 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 OR52I2Q8NH67 350 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 MARC2Q969Z3 335 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 ABHD1Q96SE0 405 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 ATP6V0BQ99437 205 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 MRPS26Q9BYN8 205 aaKnown RBP16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 EDA2RQ9HAV5 297 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 MTFP1Q9UDX5 166 aa16.32■□□□□ 0.2
CCDC28B-201ENST00000373602 IFNA6P05013 189 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 RNASE10Q5GAN6 216 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 ARRDC1Q8N5I2 433 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 DEFB125Q8N687 156 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 OR1L6Q8NGR2 347 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 C15orf40Q8WUR7 153 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 MRPL27Q9P0M9 148 aaKnown RBP16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 UFC1Q9Y3C8 167 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 SELENOKQ9Y6D0 94 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 CEPT1Q9Y6K0 416 aa16.31■□□□□ 0.2
CCDC28B-201ENST00000373602 IGHV3-35A0A0C4DH35 117 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 OR2T8A6NH00 312 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 OR11H12B2RN74 326 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 CD3DP04234 171 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 TBPP20226 339 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 RND3P61587 244 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms