RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 CCL11P51671 97 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 Q1RN00 199 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 CFIP05156 583 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 LOXL4Q96JB6 756 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 A0A0A6YYD4 124 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 Q8WTZ3 238 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 PAGE4O60829 102 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 LDB3O75112 727 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 TUSC5Q8IXB3 177 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 ZADH2Q8N4Q0 377 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 TMEM116Q8NCL8 245 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 ZNF519Q8TB69 540 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 KIDINS220Q9ULH0 1771 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 C6orf15Q6UXA7 325 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-207ENST00000367255 DAND5Q8N907 189 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 NUP37Q8NFH4 326 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 BARX1Q9HBU1 254 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-207ENST00000367255 PAXXQ9BUH6 204 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 FUT9Q9Y231 359 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 Q6P435 159 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 LHFPL1Q86WI0 220 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 MLST8Q9BVC4 326 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 MBNL3Q9NUK0 354 aaKnown RBP3.19□□□□□ -1.9
SYNE1-207ENST00000367255 SOCS1O15524 211 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 ZNF683Q8IZ20 524 aa3.19□□□□□ -1.9
SYNE1-207ENST00000367255 DHCR7Q9UBM7 475 aaKnown RBP3.19□□□□□ -1.9
SYNE1-207ENST00000367255 A4D1N5 150 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 AVPR2P30518 371 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 SHISA8B8ZZ34 492 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 ZNF479Q96JC4 524 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 KLF12Q9Y4X4 402 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TEN1Q86WV5 123 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 DEFB108AA8MXU0 73 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TRACP01848 142 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 OPRM1P35372 400 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PAX9P55771 341 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TMEM91Q6ZNR0 172 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 C5orf66Q9H5L9 145 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 ANOS1P23352 680 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 ZNF260Q3ZCT1 412 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 AMTNQ6UX39 209 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 H0YGX0 51 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CCL3P10147 92 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 HINT1P49773 126 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CLCF1Q9UBD9 225 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 KNL1Q8NG31 2342 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CLEC1BQ9P126 229 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PRB3Q04118 309 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TMEM170BQ5T4T1 132 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TRGV9Q99603 122 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 H3BML4 177 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CISD3P0C7P0 127 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 VWC2Q2TAL6 325 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 DEFB110Q30KQ9 67 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 GDF9O60383 454 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 UNC119Q13432 240 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 LINC00114Q6XXX2 140 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PROB1E7EW31 1015 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PRSS53Q2L4Q9 553 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CNRIP1Q96F85 164 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 H2BFSP57053 126 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TMEM42Q69YG0 159 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PATE4P0C8F1 98 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 RGPD1P0DJD0 1748 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PRRC2BQ5JSZ5 2229 aaKnown RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 LOXHD1Q8IVV2 1947 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 H3BUA1 57 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 SLC23A3Q6PIS1 610 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 C11orf44Q8N8P7 122 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 FOXA2Q9Y261 457 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 A0A1W2PRU2 124 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CXCL10P02778 98 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 CD7P09564 240 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 NMSQ5H8A3 153 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 C20orf173Q96LM9 149 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 IGHV2-26A0A0B4J1V2 119 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 DTX2Q86UW9 622 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 DEFB108BQ8NET1 73 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 NRG2O14511 850 aaPredicted RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TMEM187Q14656 261 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 LGALS9BQ3B8N2 356 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 LGALS9CQ6DKI2 356 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 SLC35E4Q6ICL7 350 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 SLC25A47Q6Q0C1 308 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 BHLHA9Q7RTU4 235 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 HIST1H4GQ99525 98 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 EMC6Q9BV81 110 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 PEBP1P30086 187 aaKnown RBP3.18□□□□□ -1.9
SYNE1-207ENST00000367255 TAS2R4Q9NYW5 299 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 FRRS1LQ9P0K9 344 aa3.18□□□□□ -1.9
SYNE1-207ENST00000367255 H0YGG7 62 aa3.17□□□□□ -1.9
SYNE1-207ENST00000367255 CD40P25942 277 aa3.17□□□□□ -1.9
SYNE1-207ENST00000367255 SF3B6Q9Y3B4 125 aaKnown RBP3.17□□□□□ -1.9
SYNE1-207ENST00000367255 LRRC29Q8WV35 223 aa3.17□□□□□ -1.9
SYNE1-207ENST00000367255 CSTL1Q9H114 145 aa3.17□□□□□ -1.9
SYNE1-207ENST00000367255 FZR1Q9UM11 496 aa3.17□□□□□ -1.9
SYNE1-207ENST00000367255 IGHV3-9P01782 118 aa3.17□□□□□ -1.9
SYNE1-207ENST00000367255 RPUSD1Q9UJJ7 312 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms