RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CDKN2AP42771 156 aaKnown RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM78Q5T7P6 136 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 C12orf73Q69YU5 71 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 RFESDQ8TAC1 157 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM74BQ9NUR3 256 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 DLL3Q9NYJ7 618 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM272A0A1B0GTI8 110 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 RNASE1P07998 156 aaKnown RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 PRDX2P32119 198 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 CNOT1A5YKK6 2376 aaKnown RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 SPRY1O43609 319 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 BCL2P10415 239 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 MBNL2Q5VZF2 373 aaKnown RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 H1FOOQ8IZA3 346 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-206ENST00000367253 KLF12Q9Y4X4 402 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 RTTNQ86VV8 2226 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 NKX2-6A6NCS4 301 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 RRHO14718 337 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 CXorf1O96002 111 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 MGPP08493 103 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 NPPCP23582 126 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 OR11H7Q8NGC8 314 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 OR4X1Q8NH49 305 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 ITLN1Q8WWA0 313 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 C20orf173Q96LM9 149 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 B9D1Q9UPM9 204 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 KBTBD11O94819 623 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 UMODP07911 640 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 CGB3P0DN86 165 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 IGFBP2P18065 325 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 CIRBPQ14011 172 aaKnown RBP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 PTX4Q96A99 478 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 C10orf35Q96D05 121 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 MRPL20Q9BYC9 149 aaKnown RBP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 MRM2Q9UI43 246 aaKnown RBP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 FXYD1O00168 92 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 CELA3AP09093 270 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 CEACAM6P40199 344 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 CYB561D1Q8N8Q1 229 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 OTOSQ8NHW6 89 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 PRDM13Q9H4Q3 707 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 HS3ST3B1Q9Y662 390 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 TRAV24A0A0B4J272 114 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 SPINT1O43278 529 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 LINC00596Q86U02 117 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 LILRA3Q8N6C8 439 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 SMIM14Q96QK8 99 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 HDHD3Q9BSH5 251 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 MPDZO75970 2070 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 TRIP11Q15643 1979 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 LOC389332A0A1B0GUA5 103 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 WNT2P09544 360 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 EWSR1Q01844 656 aaKnown RBP eCLIP7.38□□□□□ -1.23
SYNE1-206ENST00000367253 ADAMTSL5Q6ZMM2 481 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 COLCA1Q6ZS62 124 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 LINC00470Q9BZP3 86 aa7.38□□□□□ -1.23
SYNE1-206ENST00000367253 CELA2BP08218 269 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 LGALS3P17931 250 aaKnown RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 ATP1A1-AS1Q5TC04 95 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 Q6ZT83 130 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 C18orf15Q96N68 181 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 TXNDC17Q9BRA2 123 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM106BQ9NUM4 274 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 SPANXCQ9NY87 97 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 H7C1H1 209 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 CDK2AP2O75956 126 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 LHX2P50458 406 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 APOC4P55056 127 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM155Q4W5P6 130 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 TEX38Q6PEX7 206 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 NEUROG1Q92886 237 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 DUX3Q96PT4 197 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 GRIFINA4D1Z8 144 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 CDC42EP2O14613 210 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 DUSP14O95147 198 aaKnown RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 UNC119Q13432 240 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 KISS1Q15726 138 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 PRSS8Q16651 343 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 CCL13Q99616 98 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 PLAC1Q9HBJ0 212 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 AURKAIP1Q9NWT8 199 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 NHP2Q9NX24 153 aaKnown RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 LRP12Q9Y561 859 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 PDCD6O75340 191 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 HSPB1P04792 205 aaKnown RBP7.37□□□□□ -1.23
SYNE1-206ENST00000367253 ZNF688P0C7X2 276 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 ZNF117Q03924 483 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 SAMD5Q5TGI4 173 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 SPANXN1Q5VSR9 72 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM215Q68D42 235 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 C11orf44Q8N8P7 122 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 COX14Q96I36 57 aa7.37□□□□□ -1.23
SYNE1-206ENST00000367253 NPIPB11E5RHQ5 1161 aa7.36□□□□□ -1.23
SYNE1-206ENST00000367253 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-206ENST00000367253 OR2H2O95918 312 aa7.36□□□□□ -1.23
SYNE1-206ENST00000367253 MEF2BQ02080 365 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-206ENST00000367253 SHISA2Q6UWI4 295 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms