RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ZNF506Q5JVG8 444 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 IL34Q6ZMJ4 242 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 Q8IYB0 196 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 PNKDQ8N490 385 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZNF114Q8NC26 417 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 OSR1Q8TAX0 266 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 UBALD1Q8TB05 177 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 PIFOQ8TCI5 191 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 GATAD1Q8WUU5 269 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CCDC107Q8WV48 283 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 TMED6Q8WW62 240 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 DAZAP1Q96EP5 407 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 MGST2Q99735 147 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 SSX3Q99909 188 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 WDR61Q9GZS3 305 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 ZNF286AQ9HBT8 521 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ELOVL5Q9NYP7 299 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 CISD1Q9NZ45 108 aaKnown RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 COQ3Q9NZJ6 369 aa1.83□□□□□ -2.12
VPS54-202ENST00000354504 ERRFI1Q9UJM3 462 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 FOXA2Q9Y261 457 aaPredicted RBP1.83□□□□□ -2.12
VPS54-202ENST00000354504 IGHV3OR15-7A0A075B7D8 119 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 KBTBD11-OT1A0A1B0GTJ5 212 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 C13orf42A0A1B0GVH6 325 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 A0A1W2PPI3 338 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 OOEPA6NGQ2 149 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 EEF1E1-BLOC1S5C9J1V9 151 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FAM90A26D6RGX4 464 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 E5RGE8 158 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 SIRPB1O00241 398 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 TAAR5O14804 337 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 TNFSF12O43508 249 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CHST1O43916 411 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 OR7C1O76099 320 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 CYB5R3P00387 301 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 FBP1P09467 338 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 GZMHP20718 246 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 PRDX2P32119 198 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ASCL1P50553 236 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 IDH3GP51553 393 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 RND2P52198 227 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 MFAP4P55083 255 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CTAG1AP78358 180 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 OR8G1Q15617 311 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 IAH1Q2TAA2 248 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 TMEM155Q4W5P6 130 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 PATE2Q6UY27 113 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 MOB1BQ7L9L4 216 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 TMEM144Q7Z5S9 345 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 BOLLQ8N9W6 283 aaKnown RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 ITLN1Q8WWA0 313 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RDH5Q92781 318 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 SARAFQ96BY9 339 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 MUCL1Q96DR8 90 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 PDCD10Q9BUL8 212 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FAM234AQ9H0X4 552 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RIMS4Q9H426 269 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 TUBA4BQ9H853 241 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RAB9BQ9NP90 201 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 IFT46Q9NQC8 304 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 NDUFA4L2Q9NRX3 87 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 OR6C3Q9NZP0 311 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CLN8Q9UBY8 286 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RPUSD1Q9UJJ7 312 aaKnown RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 NSG2Q9Y328 171 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 NOP16Q9Y3C1 178 aaKnown RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 C5orf52A6NGY3 159 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 C15orf61A6NNL5 157 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 H0YJW9 148 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 K7EN84 100 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 VCYO14598 125 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RAB29O14966 203 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 PHF1O43189 567 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 SYNGR4O95473 234 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CLDN14O95500 239 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CXCL1P09341 107 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FABP6P51161 128 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RPS23P62266 143 aaKnown RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 EBI3Q14213 229 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ARL6IP1Q15041 203 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 Q3ZCU0 254 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ZNF672Q499Z4 452 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 LBHQ53QV2 105 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 KRBOX4Q5JUW0 171 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 MOB3BQ86TA1 216 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 TMEM17Q86X19 198 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CBLN2Q8IUK8 224 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FAM216BQ8N7L0 139 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ST6GALNAC3Q8NDV1 305 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 COQ8AQ8NI60 647 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 C17orf50Q8WW18 174 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 DCUN1D4Q92564 292 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 C14orf79Q96F83 325 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 IGF2BP2-AS1Q96M15 143 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 PSMG3Q9BT73 122 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 RTL8AQ9BWD3 113 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FNDC4Q9H6D8 234 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 GSKIPQ9P0R6 139 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 JPT1Q9UK76 154 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms