RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 F8VWA3 439 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 PEX7O00628 323 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 NPFFO15130 113 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 C1QTNF9P0C862 333 aa11.4□□□□□ -0.59
COL6A3-202ENST00000347401 KRTCAP3Q53RY4 240 aa11.4□□□□□ -0.59
COL6A3-202ENST00000347401 TMEM170BQ5T4T1 132 aa11.4□□□□□ -0.59
COL6A3-202ENST00000347401 EEF1AKMT3Q96AZ1 226 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 AHRRA9YTQ3 701 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HYAL3O43820 417 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-202ENST00000347401 TNFSF13O75888 250 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 UCP2P55851 309 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 C16orf97H3BN30 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BKO60814 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BJP06899 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BOP23527 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BBP33778 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BDP58876 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BCP62807 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST2H2BEQ16778 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-202ENST00000347401 ZNF562Q6V9R5 426 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BHQ93079 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 SCGB3A1Q96QR1 104 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BNQ99877 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIST1H2BMQ99879 126 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 CITED1Q99966 193 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 ZNF703Q9H7S9 590 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-202ENST00000347401 SDF2L1Q9HCN8 221 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HCSTQ9UBK5 93 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 SORL1Q92673 2214 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-202ENST00000347401 TRAV8-4A0A0B4J246 113 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 GRIFINA4D1Z8 144 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 OR2H2O95918 312 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 CCL20P78556 96 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HEPN1Q6WQI6 88 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 RPRMQ9NS64 109 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 TMEM14DPA8MWL7 114 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HBDP02042 147 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 GPR6P46095 362 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-202ENST00000347401 PLPPR2Q96GM1 343 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 PRR13Q9NZ81 148 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 TCF19Q9Y242 345 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 HIGD1CA8MV81 97 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 NKX2-8O15522 239 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 CXorf66Q5JRM2 361 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-202ENST00000347401 NR2C2APQ86WQ0 139 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 A0A1W2PP11 408 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 PGFP49763 221 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 LOXL3P58215 753 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 FOXL1Q12952 345 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 BHLHA9Q7RTU4 235 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 DTX1Q86Y01 620 aa11.39□□□□□ -0.59
COL6A3-202ENST00000347401 TMEM238C9JI98 176 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 LGALS1P09382 135 aaKnown RBP11.38□□□□□ -0.59
COL6A3-202ENST00000347401 SRSF7Q16629 238 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL6A3-202ENST00000347401 SLC25A47Q6Q0C1 308 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 AMER3Q8N944 861 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 NRN1Q9NPD7 142 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 APOBEC4Q8WW27 367 aaKnown RBP11.38□□□□□ -0.59
COL6A3-202ENST00000347401 FBLN5Q9UBX5 448 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 TMSB15BA0A087X1C1 80 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 MEX3AA1L020 520 aaKnown RBP11.38□□□□□ -0.59
COL6A3-202ENST00000347401 TRAV8-6A0A0B4J262 113 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 HOXA3O43365 443 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-202ENST00000347401 SRSF1Q07955 248 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL6A3-202ENST00000347401 ZNF56Q15929 161 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 ASCL4Q6XD76 172 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 ZNF721Q8TF20 911 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 ADAMTS9Q9P2N4 1935 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 ATXN8Q156A1 80 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 C14orf144Q96I85 54 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 NPFFR1Q9GZQ6 430 aa11.38□□□□□ -0.59
COL6A3-202ENST00000347401 ECSCRQ19T08 205 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 DMRTC1Q5HYR2 192 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 TMEM240Q5SV17 173 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 LDLRAD2Q5SZI1 272 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 SYNGR3O43761 229 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 UNC119Q13432 240 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 ZNF585BQ52M93 769 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 C1QL3Q5VWW1 255 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 TRAV21A0A0B4J279 112 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 APOHP02749 345 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-202ENST00000347401 NBEAP1P0C6P0 100 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 LINC00305Q7Z4B0 112 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 DSCAML1Q8TD84 2053 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 LHX8Q68G74 356 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 OR5AN1Q8NGI8 311 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 SOSTQ9BQB4 213 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 RTN4RQ9BZR6 473 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 TRBV23-1A0A0A0MS06 115 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 SCTP09683 121 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 SSTR5P35346 364 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 PRSS41Q7RTY9 318 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 IDI2-AS1Q9NZ38 188 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 TNFRSF18Q9Y5U5 241 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 J3KRW8 73 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 NPPCP23582 126 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 FUT5Q11128 374 aa11.37□□□□□ -0.59
COL6A3-202ENST00000347401 SAMD5Q5TGI4 173 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms