RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TEPPQ6URK8 271 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 ZNF833PQ6ZTB9 187 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 STPG3Q8N7X2 389 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 OR5T1Q8NG75 326 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 CCL17Q92583 94 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 NEUROG1Q92886 237 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 MRPL20Q9BYC9 149 aaKnown RBP12.59□□□□□ -0.39
UPF3B-202ENST00000345865 NKX6-3A6NJ46 265 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 IGFBP2P18065 325 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 EFNB3Q15768 340 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 TBR1Q16650 682 aa12.59□□□□□ -0.39
UPF3B-202ENST00000345865 TEX50A0A1B0GTY4 177 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 PGPEP1LA6NFU8 196 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 H7BYZ3 331 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 TNFRSF13BO14836 293 aaPredicted RBP12.58□□□□□ -0.4
UPF3B-202ENST00000345865 SOX15O60248 233 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 SAA1P0DJI8 122 aaPredicted RBP12.58□□□□□ -0.4
UPF3B-202ENST00000345865 GALR1P47211 349 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 PRCDQ00LT1 54 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 DIAPH2-AS1Q14236 149 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 ZNF114Q8NC26 417 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 ENY2Q9NPA8 101 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 PRNDQ9UKY0 176 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 PTPRQQ9UMZ3 2332 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 DCHS2Q6V1P9 2916 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 LRBAP50851 2863 aa12.58□□□□□ -0.4
UPF3B-202ENST00000345865 TRBV20OR9-2A0A075B6H5 130 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PPIAL4EA0A075B759 164 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 IGKV1OR2-108A0A075B7D4 117 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PPIAL4DF5H284 164 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 FOXH1O75593 365 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PPIAL4FP0DN26 164 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 REG1BP48304 166 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 FOXC1Q12948 553 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 MLANAQ16655 118 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 RTL8BQ17RB0 113 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 TMEM30BQ3MIR4 351 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PDZD11Q5EBL8 140 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 LINC01551Q86U37 167 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 OR10A7Q8NGE5 316 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 ZNF714Q96N38 554 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 GPR61Q9BZJ8 451 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 GSN-AS1Q9NRJ2 163 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 KCNIP2Q9NS61 270 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PPIAL4AQ9Y536 164 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PDE6DO43924 150 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 VENTXO95231 258 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 S100A12P80511 92 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PRR20EP86478 221 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PRR20CP86479 221 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PRR20DP86480 221 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PRR20BP86481 221 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PRR20AP86496 221 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 MEF2CQ06413 473 aaPredicted RBP12.57□□□□□ -0.4
UPF3B-202ENST00000345865 DMRTC2Q8IXT2 367 aaPredicted RBP12.57□□□□□ -0.4
UPF3B-202ENST00000345865 OR10W1Q8NGF6 305 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 OR4X1Q8NH49 305 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 GAL3ST2Q9H3Q3 398 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 PLEKHA3Q9HB20 300 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 CTSZQ9UBR2 303 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 ZNF257Q9Y2Q1 563 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 YTHDF2Q9Y5A9 579 aaKnown RBP12.57□□□□□ -0.4
UPF3B-202ENST00000345865 TACC2O95359 2948 aa12.57□□□□□ -0.4
UPF3B-202ENST00000345865 SHISA9B4DS77 424 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 E7EUB6 86 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 CXorf1O96002 111 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 LINC00869P0C866 280 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 HIST3H2BBQ8N257 126 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 RNASE6Q93091 150 aaKnown RBP12.56□□□□□ -0.4
UPF3B-202ENST00000345865 PCGF1Q9BSM1 259 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 LRFN3Q9BTN0 628 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 SRD5A3Q9H8P0 318 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 TMEM106BQ9NUM4 274 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 E7EQL1 145 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 H0YJW9 148 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 RPL29P47914 159 aaKnown RBP12.56□□□□□ -0.4
UPF3B-202ENST00000345865 PYY3Q5JQD4 70 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 H1FXQ92522 213 aaKnown RBP12.56□□□□□ -0.4
UPF3B-202ENST00000345865 BET1LQ9NYM9 111 aa12.56□□□□□ -0.4
UPF3B-202ENST00000345865 SCO2A0A1W2PP80 73 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 CHRNA7P36544 502 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 CDPF1Q6NVV7 123 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 ANAPC16Q96DE5 110 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 GAR1Q9NY12 217 aaKnown RBP12.55□□□□□ -0.4
UPF3B-202ENST00000345865 MIOXQ9UGB7 285 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 A0A1W2PPQ1 181 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 FABP1P07148 127 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 C1QTNF9P0C862 333 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 GATA2P23769 480 aaPredicted RBP12.55□□□□□ -0.4
UPF3B-202ENST00000345865 GCHFRP30047 84 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 CHRNB4P30926 498 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 OR5AN1Q8NGI8 311 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 HARBI1Q96MB7 349 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 SCNM1Q9BWG6 230 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 PLXNB1O43157 2135 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 ZZEF1O43149 2961 aa12.55□□□□□ -0.4
UPF3B-202ENST00000345865 LINC00587B1AMM8 73 aa12.54□□□□□ -0.4
UPF3B-202ENST00000345865 TGOLN2O43493 480 aa12.54□□□□□ -0.4
UPF3B-202ENST00000345865 CTAG1AP78358 180 aa12.54□□□□□ -0.4
UPF3B-202ENST00000345865 OR5B12Q96R08 314 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms