RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 NMNAT3Q96T66 252 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GAGE2DQ9UEU5 116 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TINAGQ9UJW2 476 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 MED19A0JLT2 244 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NPIPB7O75200 414 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 C8orf88P0DMB2 117 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CEACAM8P31997 349 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ZFAND6Q6FIF0 208 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 Q6ZPB1 254 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SLC25A26Q70HW3 274 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 OR4C3Q8NH37 302 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 MUC7Q8TAX7 377 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PHLDA1Q8WV24 401 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PATE1Q8WXA2 126 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SIGMAR1Q99720 223 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF257Q9Y2Q1 563 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NCOR2Q9Y618 2525 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TEX48A0A1B0GUV7 120 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF815PA8K554 130 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 LYRM9A8MSI8 78 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 RHODO00212 210 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SYNGR3O43761 229 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CBLN1P23435 193 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GLIPR1P48060 266 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SH2D5Q6ZV89 423 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 C9orf40Q8IXQ3 194 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 OR4X1Q8NH49 305 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 OR5P3Q8WZ94 311 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 HIST1H4GQ99525 98 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SLC25A10Q9UBX3 287 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 JPT1Q9UK76 154 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TIMM8BQ9Y5J9 83 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TECTAO75443 2155 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 DPRXA6NFQ7 191 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SHISA9B4DS77 424 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 C9JCJ5 164 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 LPAR6P43657 344 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 OR1K1Q8NGR3 316 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 FAM110DQ8TAY7 271 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SSBP4Q9BWG4 385 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 MRPS18BQ9Y676 258 aaKnown RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PCDH15Q96QU1 1955 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 GRIFINA4D1Z8 144 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ZIC2O95409 532 aaPredicted RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 CD3DP04234 171 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 SBK3P0C264 359 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 DANCRP0C864 163 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 MFAP2P55001 183 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 APOC4P55056 127 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 LOXL3P58215 753 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ODF4Q2M2E3 257 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 BHLHA9Q7RTU4 235 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 SH2D6Q7Z4S9 175 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 SPRED2Q7Z698 418 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 FOXB1Q99853 325 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 PGPEP1Q9NXJ5 209 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF835Q9Y2P0 537 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ADAMTS20P59510 1910 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 LOC101059948A0A1B0GTJ6 334 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 LEUTXA8MZ59 168 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 TMEM233B4DJY2 109 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 HSPB6O14558 160 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 CCL3L1P16619 93 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 PPP1R27Q86WC6 154 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 LINC01560Q8TB33 94 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF414Q96IQ9 312 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 DNAJC4Q9NNZ3 241 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 AZU1P20160 251 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 CNTFRP26992 372 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 DLX6P56179 175 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 B4GALNT1Q00973 533 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 PCSK4Q6UW60 755 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 MRAPQ8TCY5 172 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 TM4SF18Q96CE8 201 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 SIGLEC11Q96RL6 698 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 PARD6GQ9BYG4 376 aaPredicted RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 GFRA4Q9GZZ7 299 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 SNURFLB1AK76 121 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 HMGN4O00479 90 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 HOXA5P20719 270 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 RPL18Q07020 188 aaKnown RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 DEFB113Q30KQ7 82 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 AWAT1Q58HT5 328 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 Q6ZNB5 142 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 RIMKLAQ8IXN7 391 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 CLECL1Q8IZS7 167 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ORAOV1Q8WV07 137 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 SSMEM1Q8WWF3 244 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF714Q96N38 554 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 TTTY12Q9BZ98 90 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 TINAGL1Q9GZM7 467 aaPredicted RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF430Q9H8G1 570 aaPredicted RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 OSTCQ9NRP0 149 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 PSPNO60542 156 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 IL18BPO95998 194 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 IGFBP2P18065 325 aa2.81□□□□□ -1.96
CSMD3-202ENST00000339701 IFI27P40305 119 aaPredicted RBP2.81□□□□□ -1.96
CSMD3-202ENST00000339701 MFAP4P55083 255 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms