RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 IFNA17P01571 189 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 TRAPPC2P0DI81 140 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 TRAPPC2BP0DI82 140 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 PPIFP30405 207 aaKnown RBP17.4■□□□□ 0.38
SDC3-202ENST00000339394 CFHR3Q02985 330 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 OR10W1Q8NGF6 305 aa17.4■□□□□ 0.38
SDC3-202ENST00000339394 C2orf68Q2NKX9 166 aa17.39■□□□□ 0.37
SDC3-202ENST00000339394 THOC7Q6I9Y2 204 aaKnown RBP17.39■□□□□ 0.37
SDC3-202ENST00000339394 C10orf99Q6UWK7 81 aa17.39■□□□□ 0.37
SDC3-202ENST00000339394 OR52E5Q8NH55 327 aa17.39■□□□□ 0.37
SDC3-202ENST00000339394 WIPF2Q8TF74 440 aaPredicted RBP17.39■□□□□ 0.37
SDC3-202ENST00000339394 OR10C1Q96KK4 312 aa17.39■□□□□ 0.37
SDC3-202ENST00000339394 TMEM68Q96MH6 324 aa17.39■□□□□ 0.37
SDC3-202ENST00000339394 PDCD10Q9BUL8 212 aa17.39■□□□□ 0.37
SDC3-202ENST00000339394 PSMB11A5LHX3 300 aa17.38■□□□□ 0.37
SDC3-202ENST00000339394 SSNA1O43805 119 aa17.38■□□□□ 0.37
SDC3-202ENST00000339394 SLC35B1P78383 322 aa17.38■□□□□ 0.37
SDC3-202ENST00000339394 PRCDQ00LT1 54 aa17.38■□□□□ 0.37
SDC3-202ENST00000339394 SPINK9Q5DT21 86 aa17.38■□□□□ 0.37
SDC3-202ENST00000339394 OR1S1Q8NH92 325 aa17.38■□□□□ 0.37
SDC3-202ENST00000339394 C13orf42A0A1B0GVH6 325 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 A0A1W2PN81 502 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 IGLC7A0M8Q6 106 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 SOX15O60248 233 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 NXPH3O95157 252 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 AREGP15514 252 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 CHRNA7P36544 502 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 OR5T1Q8NG75 326 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 COL6A5A8TX70 2615 aa17.37■□□□□ 0.37
SDC3-202ENST00000339394 FAM25EA8MYX2 175 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 SPCS3P61009 180 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 WT1-ASQ06250 92 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 IAH1Q2TAA2 248 aaPredicted RBP17.36■□□□□ 0.37
SDC3-202ENST00000339394 PDLIM3Q53GG5 364 aaPredicted RBP17.36■□□□□ 0.37
SDC3-202ENST00000339394 OR5AU1Q8NGC0 362 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 SRSF8Q9BRL6 282 aaKnown RBP17.36■□□□□ 0.37
SDC3-202ENST00000339394 HSPB7Q9UBY9 170 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 CACFD1Q9UGQ2 172 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 TNFRSF9Q07011 255 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 CXorf66Q5JRM2 361 aaPredicted RBP17.36■□□□□ 0.37
SDC3-202ENST00000339394 TTC9CQ8N5M4 171 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 MDFIQ99750 246 aa17.36■□□□□ 0.37
SDC3-202ENST00000339394 C5orf51A6NDU8 294 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 IGLV1-40P01703 118 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 IGHG4P01861 327 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 REG1AP05451 166 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 OR13C7P0DN81 318 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 TEX38Q6PEX7 206 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 HSD17B13Q7Z5P4 300 aaPredicted RBP17.35■□□□□ 0.37
SDC3-202ENST00000339394 WFDC12Q8WWY7 111 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 PLEKHA3Q9HB20 300 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 GSKIPQ9P0R6 139 aa17.35■□□□□ 0.37
SDC3-202ENST00000339394 GOSR2O14653 212 aa17.34■□□□□ 0.37
SDC3-202ENST00000339394 PSMB6P28072 239 aa17.34■□□□□ 0.37
SDC3-202ENST00000339394 KRTAP10-3P60369 221 aa17.34■□□□□ 0.37
SDC3-202ENST00000339394 OR4D5Q8NGN0 318 aa17.34■□□□□ 0.37
SDC3-202ENST00000339394 OR5M8Q8NGP6 311 aa17.34■□□□□ 0.37
SDC3-202ENST00000339394 TENM1Q9UKZ4 2725 aa17.34■□□□□ 0.37
SDC3-202ENST00000339394 NPIPB5A8MRT5 1133 aa17.33■□□□□ 0.37
SDC3-202ENST00000339394 CRYGCP07315 174 aa17.33■□□□□ 0.37
SDC3-202ENST00000339394 CTRB1P17538 263 aa17.33■□□□□ 0.37
SDC3-202ENST00000339394 CTRB2Q6GPI1 263 aa17.33■□□□□ 0.37
SDC3-202ENST00000339394 GSG1LQ6UXU4 331 aa17.33■□□□□ 0.37
SDC3-202ENST00000339394 C19orf35Q6ZS72 473 aa17.33■□□□□ 0.37
SDC3-202ENST00000339394 ZBTB8BQ8NAP8 495 aaPredicted RBP17.33■□□□□ 0.37
SDC3-202ENST00000339394 FAM110DQ8TAY7 271 aaPredicted RBP17.33■□□□□ 0.37
SDC3-202ENST00000339394 FAM90A26D6RGX4 464 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 FBXO24O75426 580 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 SIX6O95475 246 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 PSMB8P28062 276 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 HOXA1P49639 335 aaPredicted RBP17.32■□□□□ 0.36
SDC3-202ENST00000339394 C11orf44Q8N8P7 122 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 C2orf50Q96LR7 162 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 CEBPZOSA8MTT3 80 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 INS-IGF2F8WCM5 200 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 ID3Q02535 119 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 TCTEX1D4Q5JR98 221 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 LCNL1Q6ZST4 164 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 COMMD1Q8N668 190 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 OR4X2Q8NGF9 303 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 KLK15Q9H2R5 256 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 RBKSQ9H477 322 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 ZNF355PQ9NSJ1 428 aa17.32■□□□□ 0.36
SDC3-202ENST00000339394 PRH1P02810 166 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 ELANEP08246 267 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 CD28P10747 220 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 NKX2-1P43699 371 aaPredicted RBP17.31■□□□□ 0.36
SDC3-202ENST00000339394 H2BFSP57053 126 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 ERHP84090 104 aaKnown RBP17.31■□□□□ 0.36
SDC3-202ENST00000339394 SRSF4Q08170 494 aaKnown RBP17.31■□□□□ 0.36
SDC3-202ENST00000339394 FOXE3Q13461 319 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 MRPL41Q8IXM3 137 aaKnown RBP17.31■□□□□ 0.36
SDC3-202ENST00000339394 OR2C3Q8N628 320 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 MS4A10Q96PG2 267 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 MAGT1Q9H0U3 335 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 MED28Q9H204 178 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 ENY2Q9NPA8 101 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 MGAT4CQ9UBM8 478 aa17.31■□□□□ 0.36
SDC3-202ENST00000339394 PF4V1P10720 104 aa17.3■□□□□ 0.36
SDC3-202ENST00000339394 DEFA4P12838 97 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms