RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 A0A1W2PQM1 296 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 C12orf77C9JDV5 145 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 K7ESF4 209 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 MGST1P10620 155 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 GUSBP11Q6P575 273 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 POM121L2Q96KW2 1035 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 CLEC5AQ9NY25 188 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 RNF212BA8MTL3 300 aa11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 MRPL33O75394 65 aaKnown RBP11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 GNG4P50150 75 aa11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 MORN2Q502X0 79 aa11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 OR10J3Q5JRS4 329 aa11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 PRR27Q6MZM9 219 aa11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 CXorf67Q86X51 503 aaPredicted RBP11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 SPEM1Q8N4L4 309 aa11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 HEYLQ9NQ87 328 aaPredicted RBP11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 TECRQ9NZ01 308 aaKnown RBP11.15□□□□□ -0.63
CCDC88C-201ENST00000331194 SPENQ96T58 3664 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 HELTA6NFD8 242 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 CELA3BP08861 270 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 CLDN18P56856 261 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 EFNB3Q15768 340 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 MIR17HGQ75NE6 70 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 RPS19BP1Q86WX3 136 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 OR2D3Q8NGH3 330 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 C18orf32Q8TCD1 76 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 MCRIP2Q9BUT9 160 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 HEATR1Q9H583 2144 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 FAM166BA8MTA8 275 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 SRD5A2P31213 254 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 SSBP4Q9BWG4 385 aaPredicted RBP11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 CLCF1Q9UBD9 225 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 MGAQ8IWI9 3026 aa11.14□□□□□ -0.63
CCDC88C-201ENST00000331194 SAA2-SAA4A0A096LPE2 208 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 ZNF891A8MT65 544 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 RAB29O14966 203 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 CD24P25063 80 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 OPRK1P41145 380 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 CCL7P80098 99 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 ALKBH6Q3KRA9 238 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 AMMECR1LQ6DCA0 310 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 TUSC5Q8IXB3 177 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 DCTN5Q9BTE1 182 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 GCM1Q9NP62 436 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 ARFGEF3Q5TH69 2177 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 TRAV9-1A0A075B6T8 112 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 IGHV1-45A0A0A0MS14 117 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 IGHV1-69-2A0A0G2JMI3 117 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 GJE1A6NN92 205 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 WNT9BO14905 357 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 MMP23AO75900 390 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 APCSP02743 223 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 GRPP07492 148 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 SSTR5P35346 364 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 RPL8P62917 257 aaKnown RBP11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 EIF4EBP1Q13541 118 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 OR4A47Q6IF82 309 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 MUC15Q8N387 334 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 SCCPDHQ8NBX0 429 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 LINC00479Q96M42 142 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 MBNL3Q9NUK0 354 aaKnown RBP11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 PSG11Q9UQ72 335 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 WASHC3Q9Y3C0 194 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 TRAV30A0A087WSZ9 112 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 TRAV9-2A0A087WT02 112 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 HBZP02008 142 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 OR10J4P0C629 311 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 GATA2P23769 480 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 WFDC12Q8WWY7 111 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 GALMQ96C23 342 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 HES4Q9HCC6 221 aa11.13□□□□□ -0.63
CCDC88C-201ENST00000331194 TRGV10A0A0A0MS01 117 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 IGHV5-10-1A0A0J9YXX1 117 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 PINLYPA6NC86 204 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 M0R2Z0 102 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 SAP30O75446 220 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 NUDT3O95989 172 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 USF1P22415 310 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 CA7P43166 264 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 SELENOVP59797 346 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 PSG5Q15238 335 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 TMEM249Q2WGJ8 235 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 GDF5OSQ5U4N7 250 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 MRPL14Q6P1L8 145 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 RNASEKQ6P5S7 137 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 Q6ZR03 302 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 LINC00596Q86U02 117 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 KCNE4Q8WWG9 221 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 hDV102S1A0JD36 115 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 FAM181BA6NEQ2 426 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 TAX1BP3O14907 124 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 HSBP1O75506 76 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 MT-CO3P00414 261 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 COX6A1P12074 109 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 CATR1Q13166 79 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 ZNF826PQ6ZT77 177 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 LINC00173Q6ZV60 143 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 STPG3Q8N7X2 389 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 FAM216AQ8WUB2 273 aa11.12□□□□□ -0.63
CCDC88C-201ENST00000331194 IMMP1LQ96LU5 166 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms