RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HCSTQ9UBK5 93 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 SAMD5Q5TGI4 173 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 SDF2L1Q9HCN8 221 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM186Q96B77 213 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 FXYD3Q14802 87 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 PEX7O00628 323 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 APOHP02749 345 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 TRBV23-1A0A0A0MS06 115 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 HBDP02042 147 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM187Q14656 261 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM196Q5HYL7 178 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 RNASEH2CQ8TDP1 164 aaKnown RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 TNFRSF18Q9Y5U5 241 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 ANKHD1Q8IWZ3 2542 aaKnown RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 GOLT1AQ6ZVE7 132 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 SHISA8B8ZZ34 492 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 MBD1Q9UIS9 605 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 SHISA7A6NL88 538 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 H3BUT2 72 aa12.24□□□□□ -0.45
COL7A1-201ENST00000328333 DLX4Q92988 240 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 KIF26AQ9ULI4 1882 aaPredicted RBP12.24□□□□□ -0.45
COL7A1-201ENST00000328333 hCG_38984A0A1B0GV85 526 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 FAM90A9PA6NNJ1 464 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 ESDP10768 282 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 LINC00587B1AMM8 73 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 CRPP02741 224 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 ZNF708P17019 499 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 DOPEY1Q5JWR5 2465 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 OR11H4Q8NGC9 324 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 SLC25A38Q96DW6 304 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 NABP2Q9BQ15 211 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 HOXA3O43365 443 aaPredicted RBP12.23□□□□□ -0.45
COL7A1-201ENST00000328333 SSTR5P35346 364 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 LURAP1LQ8IV03 231 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM249Q2WGJ8 235 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 A0A1B0GW64 132 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 TM4SF5O14894 197 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 OR2H2O95918 312 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 ASCL2Q99929 193 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 TCF19Q9Y242 345 aa12.23□□□□□ -0.45
COL7A1-201ENST00000328333 PRRC2AP48634 2157 aaKnown RBP12.23□□□□□ -0.45
COL7A1-201ENST00000328333 RND2P52198 227 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 LHX8Q68G74 356 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 LINC00305Q7Z4B0 112 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 IGHV1-69-2A0A0G2JMI3 117 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 PPIAL4DF5H284 164 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 IGHV3-13P01766 116 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 IGHV3-7P01780 117 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 EEF1AKMT3Q96AZ1 226 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 FOXC2Q99958 501 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 TSPAN7P41732 249 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 STARD6P59095 220 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 UNQ9370/PRO34162Q6UXP9 181 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 OR5AN1Q8NGI8 311 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM86BQ8N661 226 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 APOBEC4Q8WW27 367 aaKnown RBP12.22□□□□□ -0.45
COL7A1-201ENST00000328333 ACACBO00763 2458 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 HYAL3O43820 417 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-201ENST00000328333 IFI27P40305 119 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-201ENST00000328333 OR4D11Q8NGI4 311 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 OSR1Q8TAX0 266 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-201ENST00000328333 C16orf97H3BN30 126 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 CT62P0C5K7 136 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 MDKP21741 143 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-201ENST00000328333 SRSF1Q07955 248 aaKnown RBP eCLIP12.22□□□□□ -0.451e-6■■■■□ 20.2
COL7A1-201ENST00000328333 CXorf66Q5JRM2 361 aaPredicted RBP12.22□□□□□ -0.45
COL7A1-201ENST00000328333 LHX9Q9NQ69 397 aa12.22□□□□□ -0.45
COL7A1-201ENST00000328333 NRN1LQ496H8 165 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 KLK15Q9H2R5 256 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 SERF1AO75920 110 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 GDF15Q99988 308 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 UNC119Q13432 240 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 SLC25A15Q9Y619 301 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 HS3ST3B1Q9Y662 390 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 PPIAL4EA0A075B759 164 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 PRKNO60260 465 aaPredicted RBP12.21□□□□□ -0.45
COL7A1-201ENST00000328333 PPIAL4FP0DN26 164 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 PPIAL4AQ9Y536 164 aa12.21□□□□□ -0.45
COL7A1-201ENST00000328333 F2Z2F3 143 aa12.21□□□□□ -0.46
COL7A1-201ENST00000328333 SRP19P09132 144 aaKnown RBP12.21□□□□□ -0.46
COL7A1-201ENST00000328333 SLC25A48Q6ZT89 311 aaKnown RBP12.21□□□□□ -0.46
COL7A1-201ENST00000328333 C1QAP02745 245 aa12.21□□□□□ -0.46
COL7A1-201ENST00000328333 GPR6P46095 362 aaPredicted RBP12.21□□□□□ -0.46
COL7A1-201ENST00000328333 ATP5G2Q06055 141 aa12.21□□□□□ -0.46
COL7A1-201ENST00000328333 TRAV1-1A0A0B4J248 108 aa12.21□□□□□ -0.46
COL7A1-201ENST00000328333 J3KRW8 73 aa12.21□□□□□ -0.46
COL7A1-201ENST00000328333 C1QTNF9P0C862 333 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 GFRA1P56159 465 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 MORN3Q6PF18 240 aaPredicted RBP12.2□□□□□ -0.46
COL7A1-201ENST00000328333 DTX1Q86Y01 620 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 TNFSF13O75888 250 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 LEPP41159 167 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 ZNF479Q96JC4 524 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 RPRMQ9NS64 109 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 CALYQ9NYX4 217 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 NPPCP23582 126 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 FAM74A4Q5TZK3 123 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 FNDC1Q4ZHG4 1894 aaPredicted RBP12.2□□□□□ -0.46
COL7A1-201ENST00000328333 A0A1W2PR80 420 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms