RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GZMBP10144 247 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 RUNX1Q01196 453 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 HGFACQ04756 655 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 GAGE4Q13068 117 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 GAGE5Q13069 117 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 GAGE6Q13070 117 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 SUMO4Q6EEV6 95 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 OR4A5Q8NH83 315 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 WFDC12Q8WWY7 111 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 PHLDA3Q9Y5J5 127 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 CDX4O14627 284 aaPredicted RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 LINC01565O15544 149 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 ZNF205O95201 554 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 COX7A1P24310 79 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 CNTFRP26992 372 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 DUTP33316 252 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 ICAM4Q14773 271 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 ZNF585BQ52M93 769 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 TMEM177Q53S58 311 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 TCF23Q7RTU1 214 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 TDHQ8IZJ6 230 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 OR13H1Q8NG92 308 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 SRSF12Q8WXF0 261 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 TMEM45BQ96B21 275 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 TAAR3PQ9P1P4 343 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 OR51B2Q9Y5P1 312 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 ZNF638Q14966 1978 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 RBM3P98179 157 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 HIST1H2BLQ99880 126 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 GGTLC1Q9BX51 225 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 GPR35Q9HC97 309 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 VWC2LB2RUY7 222 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 LGALS1P09382 135 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 SRD5A2P31213 254 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 FGF12P61328 243 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 ATXN8Q156A1 80 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 LPAL2Q16609 132 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 KIR3DL3Q8N743 410 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 ZNF479Q96JC4 524 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 PAX1P15863 534 aa5.46□□□□□ -1.53
VPS35-201ENST00000299138 RPL32P62910 135 aaKnown RBP5.46□□□□□ -1.53
VPS35-201ENST00000299138 TNFAIP6P98066 277 aaPredicted RBP5.46□□□□□ -1.53
VPS35-201ENST00000299138 WFDC8Q8IUA0 241 aa5.46□□□□□ -1.53
VPS35-201ENST00000299138 TRBV20OR9-2A0A075B6H5 130 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 A0A1W2PQM1 296 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 SPINK2P20155 84 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 GPR6P46095 362 aaPredicted RBP5.46□□□□□ -1.54
VPS35-201ENST00000299138 HYAL1Q12794 435 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 OR10J6PQ8NGY7 276 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 VWA8A3KMH1 1905 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 A8MWP6 167 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 ANOS1P23352 680 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 LGALS7P47929 136 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 LRRC10Q5BKY1 277 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 NMSQ5H8A3 153 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 CLN8Q9UBY8 286 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 METRNQ9UJH8 293 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 NKX2-6A6NCS4 301 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 NDUFB3O43676 98 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 C1QL1O75973 258 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 TCF24Q7RTU0 167 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 ANKRD29Q8N6D5 301 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 OR51G1Q8NGK1 321 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 SSBP3Q9BWW4 388 aaPredicted RBP5.46□□□□□ -1.54
VPS35-201ENST00000299138 QTRT1Q9BXR0 403 aaKnown RBP5.46□□□□□ -1.54
VPS35-201ENST00000299138 LOC105371242A0A075B767 164 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 PPIAL4CA0A0B4J2A2 164 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 FNDC10F2Z333 226 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 NPFFO15130 113 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 APOHP02749 345 aaPredicted RBP5.46□□□□□ -1.54
VPS35-201ENST00000299138 PPIAL4GP0DN37 164 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 FGF5P12034 268 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 FMODQ06828 376 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 GAGE2AQ6NT46 116 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 LYZL2Q7Z4W2 148 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 GATD1Q8NB37 220 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 OR9G4Q8NGQ1 327 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 PRDM13Q9H4Q3 707 aa5.46□□□□□ -1.54
VPS35-201ENST00000299138 A0A0U1RRA0 63 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SHISA7A6NL88 538 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 GNG3P63215 75 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 PMS2CLQ68D20 193 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 ASPHD2Q6ICH7 369 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 PCSK4Q6UW60 755 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SMIM20Q8N5G0 67 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SPSB4Q96A44 273 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 MS4A6AQ9H2W1 248 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 C3orf80F5H4A9 247 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 J3QT63 122 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SPSB3Q6PJ21 355 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 TEPPQ6URK8 271 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SPRED2Q7Z698 418 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SCGB3A1Q96QR1 104 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 LINC00869P0C866 280 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 CCL11P51671 97 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 TMEM258P61165 79 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 CX3CL1P78423 397 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 NFAM1Q8NET5 270 aaPredicted RBP5.45□□□□□ -1.54
VPS35-201ENST00000299138 DYNLRB2Q8TF09 96 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms