RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 S100A4P26447 101 aaKnown RBP12.96□□□□□ -0.34
SHH-201ENST00000297261 PRNTQ86SH4 94 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 LEAP2Q969E1 77 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 TMEM70Q9BUB7 260 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 GCSAMLQ5JQS6 135 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 CDPF1Q6NVV7 123 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 RPP25LQ8N5L8 163 aaKnown RBP12.95□□□□□ -0.34
SHH-201ENST00000297261 CCL17Q92583 94 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 C17orf98A8MV24 154 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 HLA-DRB1P01911 266 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 QRFPP83859 136 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 TMEM116Q8NCL8 245 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 OR1L8Q8NGR8 309 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 MBD3L1Q8WWY6 194 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 C5orf42Q9H799 3197 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 IGKV1-12A0A0C4DH73 117 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 OR4C46A6NHA9 309 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 NDUFB3O43676 98 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 IGKV1D-12P01611 117 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 LDLRAD2Q5SZI1 272 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 ZNF324BQ6AW86 544 aaPredicted RBP12.95□□□□□ -0.34
SHH-201ENST00000297261 PRDM14Q9GZV8 571 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 ZNF581Q9P0T4 197 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 SELENOKQ9Y6D0 94 aa12.95□□□□□ -0.34
SHH-201ENST00000297261 ZNF785A8K8V0 405 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 SYNGR3O43761 229 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 C8orf88P0DMB2 117 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 FABP2P12104 132 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 TNFAIP6P98066 277 aaPredicted RBP12.94□□□□□ -0.34
SHH-201ENST00000297261 C10orf91Q5T1B1 145 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 VSTM2AQ8TAG5 236 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 PERPQ96FX8 193 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 ZFP30Q9Y2G7 519 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 GFRALQ6UXV0 394 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 STXBP6Q8NFX7 210 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 FAM222BQ8WU58 562 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 LYL1P12980 280 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 KLF3P57682 345 aaPredicted RBP12.94□□□□□ -0.34
SHH-201ENST00000297261 TMEM177Q53S58 311 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 SAXO1Q8IYX7 474 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 OCC1Q8TAD7 63 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 LAMA3Q16787 3333 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 MYO7BQ6PIF6 2116 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 CEACAM18A8MTB9 384 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 TNFSF13O75888 250 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 GPR6P46095 362 aaPredicted RBP12.94□□□□□ -0.34
SHH-201ENST00000297261 HSPE1P61604 102 aaKnown RBP12.94□□□□□ -0.34
SHH-201ENST00000297261 SPSB3Q6PJ21 355 aa12.94□□□□□ -0.34
SHH-201ENST00000297261 F11RQ9Y624 299 aaKnown RBP12.94□□□□□ -0.34
SHH-201ENST00000297261 A0A1B0GW64 132 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 ACSF3Q4G176 576 aaPredicted RBP12.93□□□□□ -0.34
SHH-201ENST00000297261 SCGB1D4Q6XE38 83 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 RNASE7Q9H1E1 156 aaKnown RBP12.93□□□□□ -0.34
SHH-201ENST00000297261 PCNX2A6NKB5 2137 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 CCL1P22362 96 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 SNHG12Q9BXW3 62 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 UFC1Q9Y3C8 167 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 PCNX1Q96RV3 2341 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 IL6RP08887 468 aaPredicted RBP12.93□□□□□ -0.34
SHH-201ENST00000297261 TDGF1P13385 188 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 TNFRSF1AP19438 455 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 MPV17P39210 176 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 UNQ5815/PRO19632Q6UWF5 114 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 COL25A1Q9BXS0 654 aaPredicted RBP12.93□□□□□ -0.34
SHH-201ENST00000297261 PKIBQ9C010 78 aa12.93□□□□□ -0.34
SHH-201ENST00000297261 ORM1P02763 201 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 LRRC10Q5BKY1 277 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 FAM90A2PQ658T7 463 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 GAL3ST2Q9H3Q3 398 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 ZNF407Q9C0G0 2248 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 C12orf77C9JDV5 145 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 PMCHL2Q9BQD1 86 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 MS4A5Q9H3V2 200 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 COX7A1P24310 79 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 DERL1Q9BUN8 251 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 ASCL3Q9NQ33 180 aa12.92□□□□□ -0.34
SHH-201ENST00000297261 ZFHX2Q9C0A1 2572 aaPredicted RBP12.91□□□□□ -0.34
SHH-201ENST00000297261 WNT9BO14905 357 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 GATA2P23769 480 aaPredicted RBP12.91□□□□□ -0.34
SHH-201ENST00000297261 TEX38Q6PEX7 206 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 PEF1Q9UBV8 284 aaKnown RBP12.91□□□□□ -0.34
SHH-201ENST00000297261 A0A1B0GUS0 222 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 FBLN7Q53RD9 439 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 HCP5Q6MZN7 132 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 TRGV8A0A0C4DH27 118 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 FAM157AC9JC47 383 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 UCP2P55851 309 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 SAPCD1Q5SSQ6 148 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 RPEQ96AT9 228 aa12.91□□□□□ -0.34
SHH-201ENST00000297261 TRAV1-1A0A0B4J248 108 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 TMEM210A6NLX4 147 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 MGST3O14880 152 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 FAM214BQ7L5A3 538 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 CD40P25942 277 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 HYPMO75409 117 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 RND2P52198 227 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 SRSF9Q13242 221 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHH-201ENST00000297261 CACNA1BQ00975 2339 aa12.9□□□□□ -0.34
SHH-201ENST00000297261 IGFBP2P18065 325 aa12.9□□□□□ -0.35
SHH-201ENST00000297261 RPL7P18124 248 aaKnown RBP12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms