RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SLC25A38Q96DW6 304 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 PRDM13Q9H4Q3 707 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 LAMTOR2Q9Y2Q5 125 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 FSTP19883 344 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 CD28P10747 220 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 ANAPC10Q9UM13 185 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 NCOR1O75376 2440 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 CBLN3Q6UW01 205 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 C2orf68Q2NKX9 166 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 DCAF12L2Q5VW00 463 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 PRR33A8MZF0 331 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 FXYD1O00168 92 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 IGLV3-25P01717 112 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 SCTP09683 121 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 GDF15Q99988 308 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 MYLKQ15746 1914 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 TRGV4A0A0C4DH28 118 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 C3AR1Q16581 482 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 TMEM240Q5SV17 173 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 RNF115Q9Y4L5 304 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 GFRA3O60609 400 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 LILRA1O75019 489 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 CD7P09564 240 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 JMJD8Q96S16 334 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 SPANXCQ9NY87 97 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 PSCAO43653 123 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 IGKCP01834 107 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 TMEM190Q8WZ59 177 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 PRADC1Q9BSG0 188 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 PKD1L3Q7Z443 1732 aa11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 COL11A1P12107 1806 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 FOXA3P55318 350 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-201ENST00000263630 HIGD1CA8MV81 97 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 LEPROTO15243 131 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 CXCL2P19875 107 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 TMEM54Q969K7 222 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 ST6GALNAC3Q8NDV1 305 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 SSBP3Q9BWW4 388 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 H3BMM0 161 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 OCIAD2Q56VL3 154 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 LDLRAD2Q5SZI1 272 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 INS-IGF2F8WCM5 200 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 INSP01308 110 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 PATJQ8NI35 1801 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 HSD52Q0P140 79 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 RTN4RL2Q86UN3 420 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 MIXL1Q9H2W2 232 aa11.91□□□□□ -0.5
CCDC88A-201ENST00000263630 INAFM2P0DMQ5 153 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 CD5LO43866 347 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 DUSP14O95147 198 aaKnown RBP11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 SMPXQ9UHP9 88 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 EPDR1Q9UM22 224 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 SHISA4Q96DD7 197 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 ZNF479Q96JC4 524 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 TCF19Q9Y242 345 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 HS3ST3B1Q9Y662 390 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 CEP290O15078 2479 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 PAX4O43316 350 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 IGLV3-16A0A075B6K0 115 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 TRGV11A0A075B6L2 103 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 F2Z2F3 143 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 NMBP08949 121 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 ZP4Q12836 540 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 CHCHD1Q96BP2 118 aaKnown RBP11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 TCRBV5S1A1TA0A578 114 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 TM4SF5O14894 197 aa11.9□□□□□ -0.5
CCDC88A-201ENST00000263630 A0A087WWC5 75 aa11.9□□□□□ -0.51
CCDC88A-201ENST00000263630 RICTORQ6R327 1708 aa11.9□□□□□ -0.51
CCDC88A-201ENST00000263630 FAM214BQ7L5A3 538 aa11.9□□□□□ -0.51
CCDC88A-201ENST00000263630 CMC4P56277 68 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 NPIPB3Q92617 1050 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 MRPS18BQ9Y676 258 aaKnown RBP11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 TRAV5A0A0B4J249 113 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 MPTX1A8MV57 137 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 ST6GALNAC6Q969X2 333 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 OR52E5Q8NH55 327 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 PLXNB2O15031 1838 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 ZG16O60844 167 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 MOSP00540 346 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 CTGFP29279 349 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 ZNF660Q6AZW8 331 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 C2orf82Q6UX34 121 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 DLX4Q92988 240 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 TLNRD1Q9H1K6 362 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 TNFRSF12AQ9NP84 129 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 PRSS41Q7RTY9 318 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 APCDD1LQ8NCL9 501 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 ITLN1Q8WWA0 313 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 SCARF2Q96GP6 870 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 FABP5P3A8MUU1 101 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 C1QL1O75973 258 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 TTTY12Q9BZ98 90 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 LOC102723996A0A087X1L8 192 aa11.89□□□□□ -0.51
CCDC88A-201ENST00000263630 ZNF385AQ96PM9 386 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 CEACAM8P31997 349 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 RPL34P49207 117 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 ZNF79Q15937 498 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 SFTA2Q6UW10 78 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 UCN2Q96RP3 112 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 BTAF1O14981 1849 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms