RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LRRC37A2A6NM11 1700 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 TRBV23-1A0A0A0MS06 115 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 IQCF6A8MYZ5 107 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 ID3Q02535 119 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 TFF3Q07654 80 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 LINC00305Q7Z4B0 112 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 IL36BQ9NZH7 164 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 IGKV1D-13A0A0B4J2D9 117 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 SS18L1O75177 396 aaPredicted RBP9.07□□□□□ -0.96
CD44-201ENST00000263398 IGKV1-13P0DP09 117 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 ANOS1P23352 680 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 TNFSF10P50591 281 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 HBBP68871 147 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 FAM90A1Q86YD7 464 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 ELOVL5Q9NYP7 299 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 KBTBD11-OT1A0A1B0GTJ5 212 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 LOC105371267A0A1B0GV96 52 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 MOSP00540 346 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 CGAP01215 116 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 LINC00271P0C7V0 271 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 AREGP15514 252 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 TCTAP57738 103 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 SAPCD1Q5SSQ6 148 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 PNKDQ8N490 385 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 CACNG8Q8WXS5 425 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 WDYHV1Q96HA8 205 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 LYZL4Q96KX0 146 aa9.07□□□□□ -0.96
CD44-201ENST00000263398 FBLL1A6NHQ2 334 aaKnown RBP9.06□□□□□ -0.96
CD44-201ENST00000263398 IL4P05112 153 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 IGFBP2P18065 325 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 IGHV2OR16-5A0A0B4J2B6 119 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 HOXA5P20719 270 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 PEAR1Q5VY43 1037 aaPredicted RBP9.06□□□□□ -0.96
CD44-201ENST00000263398 TMEM106BQ9NUM4 274 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 LOC105371242A0A075B767 164 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 LOC102724200A0A096LPH7 203 aaPredicted RBP9.06□□□□□ -0.96
CD44-201ENST00000263398 FABP2P12104 132 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 CX3CL1P78423 397 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 PLPPR1Q8TBJ4 325 aa9.06□□□□□ -0.96
CD44-201ENST00000263398 DPRXA6NFQ7 191 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 CGB1A6NKQ9 187 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 IGHV1-2P23083 117 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 LRTM2Q8N967 370 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 DCTN5Q9BTE1 182 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 PHLDA3Q9Y5J5 127 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 TP53BP1Q12888 1972 aaPredicted RBP9.05□□□□□ -0.96
CD44-201ENST00000263398 UQCRFS1P47985 274 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 LHX2P50458 406 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 FAM27E3Q08E93 113 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 FAM216BQ8N7L0 139 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 TRAV9-1A0A075B6T8 112 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 SLC17A3O00476 420 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 OTX1P32242 354 aaPredicted RBP9.05□□□□□ -0.96
CD44-201ENST00000263398 ATP5G3P48201 142 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 TMPRSS3P57727 454 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 MEF2CQ06413 473 aaPredicted RBP9.05□□□□□ -0.96
CD44-201ENST00000263398 SMAGPQ0VAQ4 97 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 PRDM6Q9NQX0 595 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 APOBEC3AP31941 199 aaPredicted RBP9.05□□□□□ -0.96
CD44-201ENST00000263398 GFRA1P56159 465 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 RELQ04864 619 aaPredicted RBP9.05□□□□□ -0.96
CD44-201ENST00000263398 TMEM144Q7Z5S9 345 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 LHFPL1Q86WI0 220 aa9.05□□□□□ -0.96
CD44-201ENST00000263398 IGKV1D-8A0A087WSZ0 117 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 A0A0A6YYD4 124 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 SCO2A0A1W2PP80 73 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 NPIPB6E9PJ23 425 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 NPPCP23582 126 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 TFPI2P48307 235 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 FOXA3P55318 350 aaPredicted RBP9.04□□□□□ -0.96
CD44-201ENST00000263398 RPL23P62829 140 aaKnown RBP9.04□□□□□ -0.96
CD44-201ENST00000263398 ICAM4Q14773 271 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 ACSF3Q4G176 576 aaPredicted RBP9.04□□□□□ -0.96
CD44-201ENST00000263398 FAM201AQ5SY85 155 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 MBNL2Q5VZF2 373 aaKnown RBP9.04□□□□□ -0.96
CD44-201ENST00000263398 ERASQ7Z444 233 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 SYT8Q8NBV8 401 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 PKDREJQ9NTG1 2253 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 GCSHP23434 173 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 DPM3Q9P2X0 92 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 PRR19A6NJB7 356 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 NUDT3O95989 172 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 CRYGSP22914 178 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 TAS2R60P59551 318 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 TBR1Q16650 682 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 ARTNQ5T4W7 220 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 GSN-AS1Q9NRJ2 163 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 H3BVH4 76 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 PEX7O00628 323 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 YPEL1O60688 119 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 FAM106AQ4KMX7 169 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 ATOH7Q8N100 152 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 YPEL2Q96QA6 119 aa9.04□□□□□ -0.96
CD44-201ENST00000263398 FOXD3Q9UJU5 478 aaPredicted RBP9.04□□□□□ -0.96
CD44-201ENST00000263398 LDLRAD4O15165 306 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 EFNA2O43921 213 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 RNASEH2CQ8TDP1 164 aaKnown RBP9.03□□□□□ -0.96
CD44-201ENST00000263398 FAM131CQ96AQ9 280 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 LINC00312Q9Y6C7 94 aa9.03□□□□□ -0.96
CD44-201ENST00000263398 ZNF324O75467 553 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms