RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 hDV102S1A0JD36 115 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 APCSP02743 223 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 RPL39P5Q59GN2 51 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 MRPL14Q6P1L8 145 aaKnown RBP11.91□□□□□ -0.5
SDC1-201ENST00000254351 TMEM136Q6ZRR5 245 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 OBP2BQ9NPH6 170 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 ZNF355PQ9NSJ1 428 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 IGHV3-48P01763 117 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 IGFBP2P18065 325 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 Q0VG73 95 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 OR4A47Q6IF82 309 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 KLHDC1Q8N7A1 406 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 HCFC1P51610 2035 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 HAND1O96004 215 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 TNFSF4P23510 183 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 MFAP2P55001 183 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 SELENOVP59797 346 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 MLANAQ16655 118 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 EBLN2Q6P2I7 272 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 TRAT1Q6PIZ9 186 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 SPATA12Q7Z6I5 190 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 NEUROG1Q92886 237 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 RPH3ALQ9UNE2 315 aa11.91□□□□□ -0.5
SDC1-201ENST00000254351 IGHV2OR16-5A0A0B4J2B6 119 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 NUDT3O95989 172 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 SRD5A2P31213 254 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 CA7P43166 264 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 RIPPLY3P57055 190 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 POM121L2Q96KW2 1035 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 IMMP1LQ96LU5 166 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 SFXN3Q9BWM7 321 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 CEP250Q9BV73 2442 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 M0R1X1 148 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 KLF7O75840 302 aaPredicted RBP11.9□□□□□ -0.5
SDC1-201ENST00000254351 ZNF718Q3SXZ3 478 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 TIGITQ495A1 244 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 IBA57Q5T440 356 aaKnown RBP11.9□□□□□ -0.5
SDC1-201ENST00000254351 OR2Y1Q8NGV0 311 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 OR8B2Q96RD0 313 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 NAA38Q9BRA0 125 aaKnown RBP11.9□□□□□ -0.5
SDC1-201ENST00000254351 GNG12Q9UBI6 72 aa11.9□□□□□ -0.5
SDC1-201ENST00000254351 NCOR1O75376 2440 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 J3QT63 122 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 RIPPLY2Q5TAB7 128 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 AMMECR1LQ6DCA0 310 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 OR13A1Q8NGR1 328 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 OR2T6Q8NHC8 308 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 ZNF331Q9NQX6 463 aaPredicted RBP11.89□□□□□ -0.51
SDC1-201ENST00000254351 PIGBOS1A0A0B4J2F0 54 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 UTF1Q5T230 341 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 LYSMD4Q5XG99 296 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 LINC00173Q6ZV60 143 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 AGBL5Q8NDL9 886 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 ESDP10768 282 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 CDKN1BP46527 198 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 OR2D3Q8NGH3 330 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 GNB1LQ9BYB4 327 aa11.89□□□□□ -0.51
SDC1-201ENST00000254351 CX3CL1P78423 397 aa11.88□□□□□ -0.51
SDC1-201ENST00000254351 FOXF2Q12947 444 aa11.88□□□□□ -0.51
SDC1-201ENST00000254351 TRIP6Q15654 476 aaKnown RBP11.88□□□□□ -0.51
SDC1-201ENST00000254351 MRPL52Q86TS9 123 aaKnown RBP11.88□□□□□ -0.51
SDC1-201ENST00000254351 KMT2EQ8IZD2 1858 aa11.88□□□□□ -0.51
SDC1-201ENST00000254351 SPENQ96T58 3664 aaKnown RBP11.88□□□□□ -0.51
SDC1-201ENST00000254351 RAB29O14966 203 aa11.88□□□□□ -0.51
SDC1-201ENST00000254351 MDP1Q86V88 176 aa11.88□□□□□ -0.51
SDC1-201ENST00000254351 DYSFO75923 2080 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 MUC21A0A0G2JKD1 596 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 MUC21A0A140T8X8 626 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 OR5B21A6NL26 309 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 GPR12P47775 334 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 ZNF138P52744 262 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 MUC21Q5SSG8 566 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 DCAF12Q5T6F0 453 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 C18orf32Q8TCD1 76 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 RTL8AQ9BWD3 113 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 TRBV6-6A0A0A6YYG2 114 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 TRAV5A0A0B4J249 113 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 TMEM30CPA0ZSE6 113 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 CORTO00230 105 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 OPRK1P41145 380 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 CLDN18P56856 261 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 RHOBP62745 196 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 Q0VFX4 171 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 GCNT2Q8N0V5 402 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 KCNE4Q8WWG9 221 aa11.87□□□□□ -0.51
SDC1-201ENST00000254351 FAM181BA6NEQ2 426 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 PLAUP00749 431 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 MAGEA5P43359 124 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 WFDC8Q8IUA0 241 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 Q8TCH9 128 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 DMXL2Q8TDJ6 3036 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 ITGB1BP1O14713 200 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 P0C879 139 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 ZNF137PP52743 207 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 VWC2Q2TAL6 325 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 LINC00696Q6ZRV3 163 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 OR52E5Q8NH55 327 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 BCL2L2Q92843 193 aaPredicted RBP11.86□□□□□ -0.51
SDC1-201ENST00000254351 CST9LQ9H4G1 147 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 MPC1Q9Y5U8 109 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms