RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 RAB29O14966 203 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 CXorf1O96002 111 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 NPY1RP25929 384 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 TDGF1P3P51864 188 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 RPEL1Q2QD12 228 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 SMIM21Q3B7S5 101 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 Q56UQ5 140 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 TRAT1Q6PIZ9 186 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF439Q8NDP4 499 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 LINC00470Q9BZP3 86 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 WDR83OSQ9Y284 106 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 NAV3Q8IVL0 2385 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 SPG11Q96JI7 2443 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 FAM90A26D6RGX4 464 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 SIAH2O43255 324 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 RPP30P78346 268 aaKnown RBP9.93□□□□□ -0.82
USHBP1-201ENST00000252597 BLNKQ8WV28 456 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 GGTLC1Q9BX51 225 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 SPRR3Q9UBC9 169 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 TANC2Q9HCD6 1990 aa9.93□□□□□ -0.82
USHBP1-201ENST00000252597 CA2P00918 260 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 OR5G3P0C626 314 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 MAJINQ3KP22 176 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 SPATA45Q537H7 98 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF766Q5HY98 468 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 C1orf194Q5T5A4 169 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 RNASEKQ6P5S7 137 aaKnown RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 RNASEH2CQ8TDP1 164 aaKnown RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 BORCS7Q96B45 105 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 AGMATQ9BSE5 352 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 SSBP4Q9BWG4 385 aaPredicted RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 TIMM9Q9Y5J7 89 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 ADAMTS20P59510 1910 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 IGKV3D-15A0A087WSY6 115 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 AHRRA9YTQ3 701 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 VENTXO95231 258 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 HNRNPA3P51991 378 aaKnown RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 RHOBP62745 196 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 SRSF6Q13247 344 aaKnown RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 DUX4L9Q6RFH8 374 aaPredicted RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 TEPPQ6URK8 271 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 TMEM68Q96MH6 324 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 PYGO2Q9BRQ0 406 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 GNB4Q9HAV0 340 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 KCNIP2Q9NS61 270 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 TECRQ9NZ01 308 aaKnown RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 TRAV5A0A0B4J249 113 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 M0R1B8 84 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 NTN3O00634 580 aaPredicted RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 MT-CO2P00403 227 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 CD24P25063 80 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 EFNB3Q15768 340 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 ACP7Q6ZNF0 438 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 OPN3Q9H1Y3 402 aaPredicted RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 RNF24Q9Y225 148 aa9.92□□□□□ -0.82
USHBP1-201ENST00000252597 KLF13Q9Y2Y9 288 aaPredicted RBP9.92□□□□□ -0.82
USHBP1-201ENST00000252597 HCFC1P51610 2035 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 K7EN84 100 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 BTF3P20290 206 aaKnown RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 TRA2AQ13595 282 aaKnown RBP eCLIP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 SP5Q6BEB4 398 aaPredicted RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 WDR82Q6UXN9 313 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 SLC24A4Q8NFF2 622 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 SNRNP40Q96DI7 357 aaKnown RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 MCRIP2Q9BUT9 160 aaKnown RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 NPVFQ9HCQ7 196 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 SLC35D1Q9NTN3 355 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 MBNL3Q9NUK0 354 aaKnown RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 PMS2P5A8MQ11 134 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 HSBP1O75506 76 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 LCN2P80188 198 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 ZCCHC24Q8N2G6 241 aaKnown RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 RBM14Q96PK6 669 aaKnown RBP9.91□□□□□ -0.82
USHBP1-201ENST00000252597 RCHY1Q96PM5 261 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF355PQ9NSJ1 428 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 RNF114Q9Y508 228 aa9.91□□□□□ -0.82
USHBP1-201ENST00000252597 SP9P0CG40 484 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 DUTP33316 252 aaKnown RBP9.9□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF137PP52743 207 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 MFAP2P55001 183 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 FOXA3P55318 350 aaPredicted RBP9.9□□□□□ -0.82
USHBP1-201ENST00000252597 RPL15P61313 204 aaKnown RBP9.9□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF146Q15072 292 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 PMCHL1Q16048 86 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 SRSF7Q16629 238 aaKnown RBP eCLIP9.9□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF718Q3SXZ3 478 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 CD177Q8N6Q3 437 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 NEU1Q99519 415 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF331Q9NQX6 463 aaPredicted RBP9.9□□□□□ -0.82
USHBP1-201ENST00000252597 FBXL7Q9UJT9 491 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 ZNF134P52741 427 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 LBHQ53QV2 105 aaPredicted RBP9.9□□□□□ -0.82
USHBP1-201ENST00000252597 OR10W1Q8NGF6 305 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 OR9G1Q8NH87 305 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 TPPP3Q9BW30 176 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 TP73-AS1Q9UF72 201 aa9.9□□□□□ -0.82
USHBP1-201ENST00000252597 M0QZ24 198 aa9.9□□□□□ -0.83
USHBP1-201ENST00000252597 REG1AP05451 166 aa9.9□□□□□ -0.83
USHBP1-201ENST00000252597 SPRNQ5BIV9 151 aa9.9□□□□□ -0.83
USHBP1-201ENST00000252597 BEND2Q8NDZ0 799 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms